View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_low_5 (Length: 594)
Name: NF15135_low_5
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 46 - 583
Target Start/End: Complemental strand, 10244030 - 10243496
Alignment:
| Q |
46 |
caagcaaatctgagtaacacctagaacaagcaacctaagccataaaactttcagtacatataaaatcaattaacaatggagctacttgaaaagnnnnnnn |
145 |
Q |
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| T |
10244030 |
caagcaaatcatagtaacacctagaacaagcaacctaagccataaaactttcagtacatataaaatcaattaacaatggggctacttgaaaa------aa |
10243937 |
T |
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| Q |
146 |
nnnctactccaaatcaagatcagtacattacattcgttttagcaacctagttttatcatgatatcaacannnnnnnnccccaaatcagtttcacgttcat |
245 |
Q |
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| T |
10243936 |
aaactactccaaatcaagatcagtacattacattcgttttagcaacctagttttatcatgatatcaacattttttt-ccccaaatcagtttcacattcat |
10243838 |
T |
|
| Q |
246 |
ctgcacgtttactctctacaatggaatttaaacaggagttcttcataatacttttatatgcaattaaagaccatcacaagtttgaaactacaaaagtatg |
345 |
Q |
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| T |
10243837 |
ctgcacgtttactctctagaatggaatttaaacaagagttcttcataatacttttatattcaattaaagactatcacaagtttgaaactacaaaagtatg |
10243738 |
T |
|
| Q |
346 |
tgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctactt----agttcatgattgaaaaggtagaaat |
441 |
Q |
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| T |
10243737 |
tgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctacttagttagttcatgattgaaaaggtagaact |
10243638 |
T |
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| Q |
442 |
gccacaaagcaattcttaatttttcaagtagtgattcatgtggtagcacttcagtttccatatgatacacaaacttgtacaaatcattctgcacgcaatt |
541 |
Q |
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| T |
10243637 |
gccacaaagcaattcttaatttttcaagtagtgattcatgtggtagcacttcagtttccatatgatacacaaacttgtacaaatcattctgcatgtaatt |
10243538 |
T |
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| Q |
542 |
aacccataaacatgccattccaactatcaacatttctttcat |
583 |
Q |
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| T |
10243537 |
aacccataaacatgccattccaactatcaacatttctttcat |
10243496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 227 - 484
Target Start/End: Complemental strand, 10225114 - 10224858
Alignment:
| Q |
227 |
aaatcagtttcacgttcatctgcacgtttactctctacaatggaatttaaacaggagttcttcataatacttttatatgcaattaaagaccatcacaagt |
326 |
Q |
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| T |
10225114 |
aaatcagattcacattcatctgcacgtttactctatataatggaatttaaactagagttcttcataatacttttatatgcaattaaagactatcacaagt |
10225015 |
T |
|
| Q |
327 |
ttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctac----ttagttca |
422 |
Q |
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| T |
10225014 |
ttgaaactgcaaagttatgtgtaaatt----tcagtatattttaaaagcttccattcagcatctttaacatgtgtatgtacaacctacttagttagttca |
10224919 |
T |
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| Q |
423 |
tgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcatgtgg |
484 |
Q |
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| T |
10224918 |
tgcttgaaaagttagaactgccac-aagcaattcttagtttttcaagcagtggttcatgtgg |
10224858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 319 - 581
Target Start/End: Complemental strand, 10233281 - 10233019
Alignment:
| Q |
319 |
tcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctac---- |
414 |
Q |
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|||||| | ||||||||||||||||||||||| || || | ||||||||||||| ||||||| | || |||||||||||||| | |||||||| |
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| T |
10233281 |
tcacaactctgaaactacaaaagtatgtgtaatttttttt---tatattttaaaagcttccattaagtatctttaacatgtgtattttcaacctacgtac |
10233185 |
T |
|
| Q |
415 |
----ttagttcatgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcatgtggtagcacttcagtttccatatgataca |
510 |
Q |
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| T |
10233184 |
ttagttagttcatggttgaaaaggtagaactaccacaa-gcaattcttaatttttcaagtagtgattcatgt-gtagcactccagctgccatatgatact |
10233087 |
T |
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| Q |
511 |
caaacttgtacaaatcattctgcacgcaattaacccataaacatgccattccaactatc-aacatttctttc |
581 |
Q |
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| T |
10233086 |
caaacttgtacaaaccattctgcatg----taacccatagacatggctttccaactatcaaacatttctttc |
10233019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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