View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15135_low_9 (Length: 528)
Name: NF15135_low_9
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 509
Target Start/End: Complemental strand, 37081427 - 37080935
Alignment:
| Q |
13 |
gtgagaagaagagaattggtggggataagattttcaaagcttgtgagctctataaaatcggggattcatcgtcaaagtggtgttatgaaattgcgttagt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37081427 |
gtgacaagaagagaattggtggggataagattttcaaagcttgtgagctctataaaatcggggattcatcgtcaaagtggtgttatgaaattgcattagt |
37081328 |
T |
|
| Q |
113 |
taatgttaaccatgcaaaacaatcaatactttaccttgcagttgaaaatggggacaaggaagcagtcaaagtaatcatggcgaatcgccccaacaatgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37081327 |
taatgttaaccatgcaaaacaatcaatactttaccttgcagttgaaaatggggacaaggaagcagtcaaagtaatcatggcgaatcgccccaacaatgtt |
37081228 |
T |
|
| Q |
213 |
gctgagccaaaaggattatcacccgttgtagcagcaatcatgaagcagaatcaaggtaataaatttactcatgtggataaatttcagtagttgttgaggg |
312 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37081227 |
gctaagccagaaggattatcacccgttgtagcagcaatcatgaagcagaatcaaggtaataaatttactcatatggataaatttcagtagttgttgaggg |
37081128 |
T |
|
| Q |
313 |
tagcctatgccttatctttttatattcatgttaaatattaaatctatgaccatgaaatcaaatgatcagtatcaagcggtttagtaactagttctagtta |
412 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37081127 |
tagcctatgccttatctttttacattcatgttaaatattgaatctatgaccatgaaatcaaatgattagtatcaagcggtttagtaactagttctag--- |
37081031 |
T |
|
| Q |
413 |
attagtataaatagttacagttaacgaaaaattattctagagaacccgagtttcaatcatagttaaaaaacttattggttagacttcacttgccttc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37081030 |
-ttagtataaatagttacagttaacgaaaaattattcgagagaacccgagtttcaatcatagttaaaaaacttattggttagacttcacttgccttc |
37080935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 37071586 - 37071326
Alignment:
| Q |
13 |
gtgagaagaagagaattggtggggataagattttcaaagcttgtgagctctataaaatcggggattcatcgtcaaagtggtgttatgaaattgcgttagt |
112 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||| | |
|
|
| T |
37071586 |
gtgacaagaagagaattggcggggataagattttcaaagcttgtgagctctacaagatcggggattcatcgtcgaagtggtgttatgaaattgtgtttct |
37071487 |
T |
|
| Q |
113 |
taatgttaaccatgcaaaacaatcaatactttaccttgcagttgaaaatggggacaaggaagcagtcaaagtaatcatggcgaatcgccccaacaatgtt |
212 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||| |||||||||||| ||| |||||| | ||||| |
|
|
| T |
37071486 |
taatgttaaccatgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgtt |
37071387 |
T |
|
| Q |
213 |
gctgagccaaaaggattatcacccgttgtagcagcaatcatgaagcagaatcaaggtaata |
273 |
Q |
| |
|
||| ||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
37071386 |
gctaccccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggtaata |
37071326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 93 - 270
Target Start/End: Original strand, 36946742 - 36946919
Alignment:
| Q |
93 |
tgttatgaaattgcgttagttaatgttaaccatgcaaaacaatcaatactttaccttgcagttgaaaatggggacaaggaagcagtcaaagtaatcatgg |
192 |
Q |
| |
|
||||||||| ||||||||| | ||||| ||||||| ||||| ||||||||||||| ||||||||||||||| |||| ||||||||| ||||| | | |
|
|
| T |
36946742 |
tgttatgaatttgcgttagaaatggttaattatgcaaagaaatcagtactttaccttgcggttgaaaatggggacgaggatgcagtcaaactaatcttag |
36946841 |
T |
|
| Q |
193 |
cgaatcgccccaacaatgttgctgagccaaaaggattatcacccgttgtagcagcaatcatgaagcagaatcaaggta |
270 |
Q |
| |
|
|||| |||| || |||| |||| |||| || |||||||| ||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
36946842 |
agaattgccctaagaatgatgctaagccgaagggattatcgcccattgtagcagcaatcatgaaacagaatcaaggta |
36946919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 270
Target Start/End: Original strand, 36952642 - 36952830
Alignment:
| Q |
85 |
caaagtggtgttatgaaattgcgttagttaatgttaaccatgcaaaacaatcaatactttaccttgcagttgaaaatggggacaaggaagcagtcaaagt |
184 |
Q |
| |
|
||||||| ||||||||| |||||||| | |||||| |||||||| |||| ||||||| ||||| || || |||||||| |||| | |||| | | |
|
|
| T |
36952642 |
caaagtgttgttatgaatatgcgttagaaattgttaatcatgcaaagaaatcggtactttatcttgcggtcgagaatggggaagaggatgtagtccagct |
36952741 |
T |
|
| Q |
185 |
aatcatggcgaatcgccccaaca---atgttgctgagccaaaaggattatcacccgttgtagcagcaatcatgaagcagaatcaaggta |
270 |
Q |
| |
|
|||| ||| |||| ||| ||||| ||| || ||||||| || |||||||| ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
36952742 |
aatcttggagaattgcctcaacagcaatgaagccaagccaaaggggttatcacctgttgtagcagcaatcttgaagcggaatcaaggta |
36952830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University