View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15136_high_2 (Length: 545)
Name: NF15136_high_2
Description: NF15136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15136_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 15180114 - 15180654
Alignment:
| Q |
1 |
caaagtactccaaaatgcaacaacagcatacaacaacaaattacttcaacaaacaataggaatttaccatgaagacataacatttagagatatcctcttt |
100 |
Q |
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| T |
15180114 |
caaagtactccaaaatgcaacaacagcatacaacaacaaattacttcaacaaacaataggaatttactatgaagacataacatttagagatatcctcttt |
15180213 |
T |
|
| Q |
101 |
gattcgagctaccgaggtgtaggaatattcatcgtcgattcagctagaatcagaatcgacaattgtttcttcctccatttcaacacagaaggaattaaag |
200 |
Q |
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| T |
15180214 |
gattcaagctaccgaggtggaggaatattcatcgtcgattcagctagaatcagaatcgacaattgtttcttcctccatttcaacacagaaggaattaaag |
15180313 |
T |
|
| Q |
201 |
ttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagacaattttcgggaactgcaat |
300 |
Q |
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| T |
15180314 |
ttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggtggagacaaaggcgaaagacaattttctggaactgcaat |
15180413 |
T |
|
| Q |
301 |
tgatcttgctagcaacgacaatgctatcactgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaacataatcacaggtgtg |
400 |
Q |
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| T |
15180414 |
tgatcttgctagcaatgacaatgctatcaccgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaacataatcacaggtgtg |
15180513 |
T |
|
| Q |
401 |
cattgttataacaaagcaacaggttttggtggaattggaattttgttgaaattagctgggaattcacaaacaagaattgataattgttacatggattata |
500 |
Q |
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| T |
15180514 |
cattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataattgttacatggattata |
15180613 |
T |
|
| Q |
501 |
atagtatagtcatggaagatcctgttcaagttcatctcact |
541 |
Q |
| |
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| T |
15180614 |
atagtatagtcatggaagatcctgttcaagttcatgtcact |
15180654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 59 - 541
Target Start/End: Complemental strand, 38859721 - 38859239
Alignment:
| Q |
59 |
ggaatttaccatgaagacataacatttagagatatcctctttgattcgagctaccgaggtgtaggaatattcatcgtcgattcagctagaatcagaatcg |
158 |
Q |
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||||| ||| |||||||| |||| || || || |||||||||||||| || ||| |||| | |||| | ||||| || ||||| ||||||| | | ||| |
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| T |
38859721 |
ggaatatactatgaagacgtaactttcagggacatcctctttgattcaaggtacagaggaggaggacttttcattgttgattccgctagaacccggatca |
38859622 |
T |
|
| Q |
159 |
acaattgtttcttcctccatttcaacacagaaggaattaaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagt |
258 |
Q |
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| T |
38859621 |
acaactgcttcttcttgcatttcaccacagaaggaattctagtgcagcaagggcatgagacattcatatcaagttgttttcttggacaacactcaacagt |
38859522 |
T |
|
| Q |
259 |
cggcggagacaaaggcgaaagacaattttcgggaactgcaattgatcttgctagcaacgacaatgctatcactgatgtcgcaattttctcagcagccatt |
358 |
Q |
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| T |
38859521 |
tggcggtgaccatggcgagaaggactattccggggtcggtattgatcttgctagtaatgacaatgcaatcactgatgtcgcgattttctcggcagccact |
38859422 |
T |
|
| Q |
359 |
ggaattgttgttaggggacaagctaacataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaaattagctg |
458 |
Q |
| |
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|| ||||| | || || || |||||||| | |||| ||||||||||||||||||||| |||| ||||| || || || || || ||||||| || | |
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| T |
38859421 |
ggtattgtgctaagaggtcaggctaacattctatcaggggtgcattgttataacaaagcagcaggatttggaggtataggtatcttagtgaaattggcag |
38859322 |
T |
|
| Q |
459 |
ggaattcacaaacaagaattgataattgttacatggattataatagtatagtcatggaagatcctgttcaagttcatctcact |
541 |
Q |
| |
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| ||||| ||| |||||||| || ||||| |||||||||| | ||||||| | |||||| ||||||||||||||| ||||| |
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| T |
38859321 |
gaaattctttaactagaattgacaactgttatatggattatactggtatagtaacggaagaccctgttcaagttcatgtcact |
38859239 |
T |
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