View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15136_high_3 (Length: 271)
Name: NF15136_high_3
Description: NF15136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15136_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 44751069 - 44751332
Alignment:
| Q |
1 |
accgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaatatcattctgtgtatctgatgttgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44751069 |
accgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaatatcattctgtgtatctgatgttgtgt |
44751168 |
T |
|
| Q |
101 |
acaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtgtttatatagcatccccttaaatcagttgcaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44751169 |
acaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtgtttatatagcatccccttaaatcagttgcaga |
44751268 |
T |
|
| Q |
201 |
aaatgttccaacaagtttcctgcatctcccctgcaaccagattattgcattatgttagtattat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44751269 |
aaatgttccaacaagtttcctgcatctcccctgcaaccagattattgcattatgttagtattat |
44751332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 44744429 - 44744596
Alignment:
| Q |
1 |
accgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaatatcattctgtgtatctgatgttgtgt |
100 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
44744429 |
accgccttattgattacctcggacaaagtttattcagcatggcatgtcacaagctcccttctaggagtaccaatatcattatgtgtatcagatgttgtgt |
44744528 |
T |
|
| Q |
101 |
acaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtg |
168 |
Q |
| |
|
|||||||||| ||||||||||||| ||| || || ||||||||| |||| |||||||||||||||||| |
|
|
| T |
44744529 |
acaaaggacttgttgcaatttgtttagtaaaagctagtgcacttgttcccaaccatgatttcaatgtg |
44744596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University