View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15136_low_1 (Length: 592)
Name: NF15136_low_1
Description: NF15136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15136_low_1 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 186 - 576
Target Start/End: Original strand, 43316547 - 43316937
Alignment:
| Q |
186 |
atatattatgaatttacctctatgtaatttctctatttttacttaatggaaagttgtattaatactatgatggtggatcaggtgagagcgaaacattttt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43316547 |
atatattatgaatttacctctatgtaatttctctatttttacctaatggaaagttgtattaatactatgatggtggatcaggtgagagcgaaacattttt |
43316646 |
T |
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| Q |
286 |
acagaaagccatccaagagcaagggaaagcaagaatgatggagacaatacaggagattgaggagagacatggtgcagtgaaagagatagagagaaatcta |
385 |
Q |
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| T |
43316647 |
acagaaagccatccaaaagcaagggagagcaacaatgatggagaaaatacaggagattgaggagagacatggtgcagtgaaagagatagagagaaatcta |
43316746 |
T |
|
| Q |
386 |
aaagagctgcatcaagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagccaaatgatgcgagcaaattcgt |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43316747 |
aaagagctgcatcaagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagccaaatgatgcgagcaaattcgt |
43316846 |
T |
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| Q |
486 |
atgttagaggaggagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtaaatggacatgttttgccattttactactcct |
576 |
Q |
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| T |
43316847 |
atgttagaggaggagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtgaatggacatgttttgccattttactactcct |
43316937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 43316453 - 43316486
Alignment:
| Q |
115 |
aagaatagtaattttttaataaataatgcttaaa |
148 |
Q |
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| T |
43316453 |
aagaatagtaattttttaataaataatgcttaaa |
43316486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 265 - 564
Target Start/End: Complemental strand, 24710359 - 24710060
Alignment:
| Q |
265 |
aggtgagagcgaaacatttttacagaaagccatccaagagcaagggaaagcaagaatgatggagacaatacaggagattgaggagagacatggtgcagtg |
364 |
Q |
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|||||| || |||||||||||||| ||||| ||||| | ||||| | ||||| || ||||| ||||| || || ||| | ||||| |||| ||||| |
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| T |
24710359 |
aggtgaaagtgaaacatttttacaaaaagcaatccagcaacaaggaagagcaaacatcatggacacaatccaagaaattcaagagaggcatgacacagtg |
24710260 |
T |
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| Q |
365 |
aaagagatagagagaaatctaaaagagctgcatcaagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagcc |
464 |
Q |
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||||||||||| |||||||||| ||||| || ||||||||| |||||||| | |||||||| ||||| ||||||||| | ||| || | ||||| |||| |
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| T |
24710259 |
aaagagatagaaagaaatctaatggagcttcaccaagtgtttatggacatgtctgttttggttcaatcacaaggtgaacaattggataatattgaaagcc |
24710160 |
T |
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| Q |
465 |
aaatgatgcgagcaaattcgtatgttagaggaggagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtaaatggacatgttttgccat |
564 |
Q |
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| T |
24710159 |
acgtggcacgtgctaattcgtatgttagaggtggggtccaacaattgcatgttgctaggaagcaccaaatgaataccagaaaatggacttgtattgccat |
24710060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 10228327 - 10228289
Alignment:
| Q |
140 |
atgcttaaagagtaccttggaacactcgttaacaagacc |
178 |
Q |
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| T |
10228327 |
atgcttaaagagtacctagggacactcgttaacaagacc |
10228289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 565792 - 565833
Alignment:
| Q |
140 |
atgcttaaagagtaccttggaacactcgttaacaagaccctt |
181 |
Q |
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| T |
565792 |
atgcttaaagagtatctcgggacactcgttaacaagaccctt |
565833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 62623 - 62663
Alignment:
| Q |
140 |
atgcttaaagagtaccttgga-acactcgttaacaagaccc |
179 |
Q |
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| T |
62623 |
atgcttaaagagtaccctggagacactcgttaacaagaccc |
62663 |
T |
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