View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15137_high_1 (Length: 428)
Name: NF15137_high_1
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 13896987 - 13897234
Alignment:
| Q |
12 |
atgaagtgtagtcgctggagttcctaaatatattgaagttacaaaattggtgtatctttt-gtcatactaataaatgaaagactcattcgagaactaaac |
110 |
Q |
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| T |
13896987 |
atgaagtgtagtcgccggagttcctaaatgtattgaaattataaaattgatgtatttttttgtcatactaacaaatgaaagactcattcgagaattaaac |
13897086 |
T |
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| Q |
111 |
tgactaacgaaagtcatatctagatgtgnnnnnnnnataattttgatacattcaccaactattatgactctgcctcaaacgcgtttaagaatcaaaatga |
210 |
Q |
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| T |
13897087 |
tgactaacgaaagtcatatctagatgtgttttttt-ataattttgatacattcaccgactattgtgactctgcctcaaacgcgtttaagaatcaaaatga |
13897185 |
T |
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| Q |
211 |
ttgtttactctgcatcaatcacttgtgcccggcagcgcctaatcacttg |
259 |
Q |
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| T |
13897186 |
ttgtttactctgcatcaatcacttgcgcccggcagcgcctaatcacttg |
13897234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 342 - 413
Target Start/End: Original strand, 13897317 - 13897388
Alignment:
| Q |
342 |
ttattacctccttatgatccacaggaacagaaggatataatctaagagcttctgaaagagctgcatgcaaat |
413 |
Q |
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| T |
13897317 |
ttattacctccttacaatccacaggaacagaaggatataatctaagagcttctgaaagagctgcatgcaaat |
13897388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 13887904 - 13887828
Alignment:
| Q |
337 |
aactattattacctccttatgatccacaggaacagaaggatataatctaagagcttctgaaagagctgcatgcaaat |
413 |
Q |
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| T |
13887904 |
aacttttattacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaagagcagcatgcaaat |
13887828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 1034388 - 1034457
Alignment:
| Q |
344 |
attacctccttatgatccacaggaacagaaggatataatctaagagcttctgaaagagctgcatgcaaat |
413 |
Q |
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| T |
1034388 |
attacctccttacgatccacaggcacagaagggtacaatctaagagcttctgaaagagcagcatgcaaat |
1034457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 28666656 - 28666701
Alignment:
| Q |
344 |
attacctccttatgatccacaggaacagaaggatataatctaagag |
389 |
Q |
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| T |
28666656 |
attacctccttgtgatcaacaggaacagaaggatataatctgagag |
28666701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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