View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15137_high_10 (Length: 243)
Name: NF15137_high_10
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_high_10 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 13652045 - 13652270
Alignment:
| Q |
18 |
atttactctatctaatttttaattactcaagagtcaaaattatatcaatttaaattttgatttgttataatgtctcattgcagattttttctgaagccac |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
13652045 |
atttactctatctaatttttaattactcaagattcaaaattatatcaatttaaattttgatttgttataatttctcattgcagattttttctgaacccac |
13652144 |
T |
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| Q |
118 |
tcatgctgttttatcggctgcagtctttttaatgactattgtggttcctctcgctatcaatgcgatatataagccgaggaagagatttgagcagaacaag |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13652145 |
tcatgctgttttatcggctgcggtctttttaatgactattgtggttcctctcgttattaatgcgatatataagcccaggaagagatttgagcagaacaag |
13652244 |
T |
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| Q |
218 |
ctaaagactatacaaaagcttagact |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
13652245 |
ctaaagactatacaaaagcttagact |
13652270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 13659545 - 13659770
Alignment:
| Q |
18 |
atttactctatctaatttttaattactcaagagtcaaaattatatcaatttaaattttgatttgttataatgtctcattgcagattttttctgaagccac |
117 |
Q |
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||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| | |||| |
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| T |
13659545 |
atttactctatatgatttttaattactcataagtcaaaattatatcaatttaaactttgatttgttataatgtgtcattgcagattctttctccacccac |
13659644 |
T |
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| Q |
118 |
tcatgctgttttatcggctgcagtctttttaatgactattgtggttcctctcgctatcaatgcgatatataagccgaggaagagatttgagcagaacaag |
217 |
Q |
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| T |
13659645 |
ccatgctgttttaactgctgcagtacttttaatgactatagtggtgcctcccacaatcaatgtcatatataagccgagaaagagatttgagcagaacaag |
13659744 |
T |
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| Q |
218 |
ctaaagactatacaaaagcttagact |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
13659745 |
ctaaagactatacaaaagcttagact |
13659770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 438628 - 438505
Alignment:
| Q |
120 |
atgctgttttatcggctgcagtctttttaatgactattgtggttcctctcgctatcaatgcgatatataagccgaggaagagatttgagcagaacaagct |
219 |
Q |
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||||||||||| | ||||||| || |||||||||| ||||| ||| | |||||||| ||||| ||||| || |||||||||||| | || ||||| |
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| T |
438628 |
atgctgttttaacctctgcagttcttctaatgactatagtggtggctcctgtcatcaatgccatatacaagcccagaaagagatttgagaataataagct |
438529 |
T |
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| Q |
220 |
aaagactatacaaaagcttagact |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
438528 |
aaagactatacaaaagcttagact |
438505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 243
Target Start/End: Original strand, 28608222 - 28608399
Alignment:
| Q |
66 |
tttaaattttgatttgttataatgtctcattgcagattttttctgaagccactcatgctgttttatcggctgcagtctttttaatgactattgtggttcc |
165 |
Q |
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||||| ||||||||||||||||||| ||||| |||||| || || | | || ||| ||||||| | | ||||| ||||||||||||| ||||| | |
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| T |
28608222 |
tttaatttttgatttgttataatgtgtcatttcagattattactccaccaacctatgttgttttaacatcagcagttattttaatgactatagtggtagc |
28608321 |
T |
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| Q |
166 |
tctcgctatcaatgcgatatataagccgaggaagagatttgagcagaacaagctaaagactatacaaaagcttagact |
243 |
Q |
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|| | || |||| ||||| ||||| | ||||||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
28608322 |
tcccatcataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagact |
28608399 |
T |
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