View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15137_high_12 (Length: 214)
Name: NF15137_high_12
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 41854125 - 41853916
Alignment:
| Q |
1 |
cccaaatggatggatcagataagagtgagctgtgacagtagccttgaaggaccaaatgaagatggctacaactggagaaaatatggtcagaaagatatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41854125 |
cccaaatggatggatcagataagagtgagctgtgacagtagccttgaaggaccaaatgaagatggctacaactggagaaaatatggtcagaaagatatcc |
41854026 |
T |
|
| Q |
101 |
ttggcaccaaacatccaaggtgagaggaattctaatatcatgcttaagaaaaaaccataagaattcttgaattatgtataaattgcatttaccgatgatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41854025 |
ttggcaccaaacatccaaggtgagaggaattctaatatcatgcttaagaaaaaaccataagaattcttgaattatgtataaattgcatttacctgtgatg |
41853926 |
T |
|
| Q |
201 |
tccatctcatt |
211 |
Q |
| |
|
| ||||||||| |
|
|
| T |
41853925 |
t-catctcatt |
41853916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 41261617 - 41261569
Alignment:
| Q |
73 |
tggagaaaatatggtcagaaagatatccttggcaccaaacatccaaggt |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
41261617 |
tggagaaaatatggtcagaaagacatccttggagccatgcatccaaggt |
41261569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University