View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15137_high_2 (Length: 423)

Name: NF15137_high_2

Description: NF15137

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15137_high_2

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 267; E-Value: 1e-149

Query Start/End: Original strand, 50 - 423

Target Start/End: Original strand, 13871154 - 13871511

Alignment:

Q	50	tgaaattttcattctttgaagttcacaggagcacctatgaagtaacaaatcatatacttactgaatttattcacactgtcaaattattagaacatattca	149	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \| \|
T	13871154	tgaaattttcattctttgaagttcacagtagcacctatgaagtaacaaatcatatacttactgaatttattcacactgtcaaatt--taaaaaaaa----	13871247	T

Q	150	cactatcaaatttaagatagtttttagataatatttctctaagtaaatttacaagcaaaatttaatctgagtacatttaaatgtctttgtcgcccaaaca	249	Q
		\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13871248	------caact----gatagtttatagataatatgtctctaagtaaatttacaagcaaaatttaaactgagtacatttaaatgtctttgtcgcccaaaca	13871337	T

Q	250	catgatcaaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatccgtaagtcctggaatataagtcacac	349	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13871338	catgatcaaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagatatcttgtttgttagtaatccgtaagtcctggaatataagtcacac	13871437	T

Q	350	tattggctcatttgcattatattctcttcaatacactttaaagaggttgaatcatcaaatgttactcttcccat	423	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13871438	tattggcacatttgcattatattctcttcaatacactttaaagagtttgaatcatcaaatgttactcttcccat	13871511	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2

Raw Score: 51; E-Value: 4e-20

Query Start/End: Original strand, 271 - 333

Target Start/End: Complemental strand, 12957543 - 12957481

Alignment:

Q	271	tgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatccgtaagtcct	333	Q
		\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	12957543	tgttaaaactattggaaatacatttagttaagataacttgtttgttagtaatcagtaagtcct	12957481	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3

Raw Score: 42; E-Value: 0.00000000000001

Query Start/End: Original strand, 2 - 47

Target Start/End: Original strand, 13870689 - 13870734

Alignment:

Q	2	tacggtggctttgatagaggagaagaggcgggaaaatgacattgag	47	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	13870689	tacggtggctttgatagaggagaagaggcgggaaaatgccattgag	13870734	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4

Raw Score: 42; E-Value: 0.00000000000001

Query Start/End: Original strand, 251 - 324

Target Start/End: Original strand, 13873703 - 13873776

Alignment:

Q	251	atgatcaaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatcc	324	Q
		\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	13873703	atgaccaaagaaaatttcaatgataaaactattggaaattcatttagttaagataatttgtttattagtaatcc	13873776	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5

Raw Score: 37; E-Value: 0.00000000001

Query Start/End: Original strand, 256 - 324

Target Start/End: Original strand, 13877603 - 13877671

Alignment:

Q	256	caaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatcc	324	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|
T	13877603	caaagaaaatttcaatgataaaactattggaaattcatttagttaagataatttatttattagtaatcc	13877671	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]