View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15137_high_3 (Length: 411)
Name: NF15137_high_3
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 38142360 - 38142741
Alignment:
| Q |
15 |
caaaggaccatgtatgtaaacctctcatcccattctggattaggatcagttgagacaacctgatcagcatgagtataaaacataatgttacttggtttaa |
114 |
Q |
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| T |
38142360 |
caaaggaccatgtatgtaaacctctcatcccattctggattaggaccagttgagacaacctgatcagcatgagtataaaacataatgttacttggtttaa |
38142459 |
T |
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| Q |
115 |
acatatttaataatctgcatcattagactcaagtgtctaattaattaatcaattatgaattgacataatcaatctataagtga-ttaattagatgattta |
213 |
Q |
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| T |
38142460 |
acatatttaataatctgcatcattagactcaagtgtctaattaattaatcaattatgaattgacataatcaatctataagtgatttaattagatgattta |
38142559 |
T |
|
| Q |
214 |
aacattttaggttgtcagatagataaatgtgaaaacataaataaacnnnnnnnttaccttggttcgcctcgagtgtaatcttaccttgatttcgaacaca |
313 |
Q |
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| T |
38142560 |
aacattttaggttgtcggatagataaatgtgaaaacataaataaacaaaaaaattaccttggttcgcctcgagtgtaatcttaccttgatttccaacaca |
38142659 |
T |
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| Q |
314 |
ctgtctcatattgttaccacgcttgacgatcatcaccaatataaattccgccttctcaaaaaatagaaccggaccaaattgg |
395 |
Q |
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| T |
38142660 |
ctgtctcatattgttaccacgcttgacgatcatcaccaatataaattccgccttctcaaaaaatagaaccggaccaaattgg |
38142741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 38157054 - 38157099
Alignment:
| Q |
308 |
aacacactgtctcatattgttaccacgcttgacgatcatcaccaat |
353 |
Q |
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| T |
38157054 |
aacagactgtctcatattgttaccacgcttgacgatcaccaccaat |
38157099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 25189476 - 25189444
Alignment:
| Q |
155 |
ttaattaatcaattatgaattgacataatcaat |
187 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
25189476 |
ttaattaatcaattatgaattgaaataatcaat |
25189444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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