View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15137_high_5 (Length: 317)
Name: NF15137_high_5
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 7058819 - 7058539
Alignment:
| Q |
19 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaatgtagtagttgaataaaagtgcttcttta |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
7058819 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatcaacgtagtagtcgaataaaagtgcttcttta |
7058720 |
T |
|
| Q |
119 |
atcttggtgtgttgtgggcaagttttaaagatcttacttaagatgatcaaattatatttgagtttatattggaatgggtgaagtttagctggtattagta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |
|
|
| T |
7058719 |
atcttggtgtgttgtgggcaagttttaaagatcttacttaagatgatcaaattatatttgagtttatattggaatggttgaagtttagcttgtattagga |
7058620 |
T |
|
| Q |
219 |
ttcatgattagagagacttcatatgctagctggtttgtgtattagaagagctttgagtttaatttagttgaatcatagaca |
299 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
7058619 |
ttcatgattagacagacttcatatggtagctggtttgtgtattagaagagctttgagtttgatttagttgaaccatagaca |
7058539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 7029410 - 7029204
Alignment:
| Q |
19 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaatgtagtagt---tgaataaaagtgcttct |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
7029410 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagtagttgaatagaagtggttct |
7029311 |
T |
|
| Q |
116 |
ttaatcttggtgtgttgtgggcaagttttaaagatcttacttaagatgatcaaattatatttgagtttatattggaatgggtgaagtttagctggtatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | |||||||| |||||||| |
|
|
| T |
7029310 |
ttaatcttggtgtgttgtgggcaagttttaaagatcttacttaagatgatcaaattatagttgagtttatgttggaatggttaaagtttagatggtatta |
7029211 |
T |
|
| Q |
216 |
gtattca |
222 |
Q |
| |
|
||||||| |
|
|
| T |
7029210 |
gtattca |
7029204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 7014052 - 7013846
Alignment:
| Q |
19 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaatgtagtagt---tgaataaaagtgcttct |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
7014052 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagtagttgaatagaagtggttct |
7013953 |
T |
|
| Q |
116 |
ttaatcttggtgtgttgtgggcaagttttaaagatcttacttaagatgatcaaattatatttgagtttatattggaatgggtgaagtttagctggtatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| | |||||||| |||||||| |
|
|
| T |
7013952 |
ttaatcttggtgtgttgtgggcaagttttaaagatcttacttaagatgatcaaattatagttgagtttatgttgaaatggttaaagtttagatggtatta |
7013853 |
T |
|
| Q |
216 |
gtattca |
222 |
Q |
| |
|
||||||| |
|
|
| T |
7013852 |
gtattca |
7013846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 7063285 - 7063227
Alignment:
| Q |
55 |
tgaattactgtcaagagagcatattttgcaatgaatgtagtagttgaataaaagtgctt |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7063285 |
tgaataactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgctt |
7063227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 7063222 - 7063173
Alignment:
| Q |
181 |
tttatattggaatgggtgaagtttagctggtattagtattcatgattaga |
230 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
7063222 |
tttatattggaatggttaaagtttaaatggtattagtattcatgattaga |
7063173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University