View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15137_low_1 (Length: 561)
Name: NF15137_low_1
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 15 - 545
Target Start/End: Original strand, 2406432 - 2406957
Alignment:
| Q |
15 |
tcttctcagaaaaactgaagtttgaaaaccatacttctattacaccaagacttttttacaatgaaaatcatcttaaatacaattatcatccatagaagaa |
114 |
Q |
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| T |
2406432 |
tcttctcagaaaaactgaagtttgaaaaccataattctattacaccaagacttttttacaatgaaaatcatcttaaatacaattatcatccatagaagaa |
2406531 |
T |
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| Q |
115 |
gttattatattttattttacaacttatcnnnnnnnnttgcatcaaaactattaatatagaagtcaacatacaagaatgatgaagtcattggtctgactat |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2406532 |
gttattatattttattttacaacttatcaaaaaaaattgcatcaaaactattaatatagaagtcaacatacaagaatgatgaagtcattggtctgactat |
2406631 |
T |
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| Q |
215 |
tttctgtttcaatctctttgtccaaactgtctccacgatttgcactgtatagaagacattgccagtcaaatnnnnnnnnnnnnngcacgaagcagatcat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
2406632 |
tttctgtttcaatctctttgtccaaactgtctccacgatttgcactgtatagaagacattgccagtcaaataaaaaaaa-----gcaagaagcagatcat |
2406726 |
T |
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| Q |
315 |
ttaataaattttaatttgaacctccaaaactataccttcttcctattacaaatctcacaatgatgcctttctgttctgcaagattttttatagatgcacc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2406727 |
ttaataaattttaatttgaacctccaaaactataccttcttcctattacaaatctcacaatgatgcctttctgttctgcaagattttttatagatgcacc |
2406826 |
T |
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| Q |
415 |
tgcagagatagggcagcaatatgttcagaaaatgcttacacaaaaagactaaaatacagaagctagatttgaaatttgtagaatttcaaataacaaatag |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2406827 |
tgcagagatagggcagcaatatgttcagaaaatgcttacacaaaaagactaaaatacagaagctagatttgaaatttgtagaatttcaaataacaaatag |
2406926 |
T |
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| Q |
515 |
tgtgatttattacgaagatatggctaatcat |
545 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2406927 |
tgtgatttattacgaagatatggctaatcat |
2406957 |
T |
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