View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15137_low_10 (Length: 248)
Name: NF15137_low_10
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_low_10 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 13652341 - 13652582
Alignment:
| Q |
1 |
cagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgcacttgttgctgctcatatgg |
100 |
Q |
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| T |
13652341 |
cagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgcacttgttgctgctcatatgg |
13652440 |
T |
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| Q |
101 |
ataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaagcacttggagaagcgtacga |
200 |
Q |
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| T |
13652441 |
ataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaagcatttggagaggcgtacga |
13652540 |
T |
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| Q |
201 |
ttctgttagagtccaaaccttaaatgttgtgtcatcctatgc |
242 |
Q |
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| T |
13652541 |
tgctgttagagtccgaaccttaaatgttgtgtcatcctatgc |
13652582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 13659844 - 13660080
Alignment:
| Q |
4 |
tctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgcacttgttgctgctcatatggata |
103 |
Q |
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| T |
13659844 |
tctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaactcaaaggacgtactggtgcacttgttgccgctcatatggata |
13659943 |
T |
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| Q |
104 |
agcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaagcacttggagaagcgtacgattc |
203 |
Q |
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| T |
13659944 |
agcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagcattaataatacatttgaagcacttggagaggcatatgatgc |
13660043 |
T |
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| Q |
204 |
tgttagagtccaaaccttaaatgttgtgtcatcctat |
240 |
Q |
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| T |
13660044 |
tgtcagagtcgaaaccttaaatgttgtgtcatcctat |
13660080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 28608473 - 28608702
Alignment:
| Q |
4 |
tctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgcacttgttgctgctcatatggata |
103 |
Q |
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| T |
28608473 |
tctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgttggacgtgatggtgcacttgttgcttctcatatggaga |
28608572 |
T |
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| Q |
104 |
agcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaagcacttggagaagcgtacgattc |
203 |
Q |
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| T |
28608573 |
agcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagtattgataataaatttgaagcactcagagaggcatatgatgc |
28608672 |
T |
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| Q |
204 |
tgttagagtccaaaccttaaatgttgtgtc |
233 |
Q |
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| T |
28608673 |
tatcagagtagaaacgttaaatgttgtgtc |
28608702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 438429 - 438201
Alignment:
| Q |
6 |
tttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgcacttgttgctgctcatatggataag |
105 |
Q |
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| T |
438429 |
tttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcccttgttgcttctcatatggaaaaa |
438330 |
T |
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| Q |
106 |
cctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaagcacttggagaagcgtacgattctg |
205 |
Q |
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| T |
438329 |
tctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcattaccaatacctttgaagcattcaaagaggcatatgatgcta |
438230 |
T |
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| Q |
206 |
ttagagtccaaaccttaaatgttgtgtca |
234 |
Q |
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| T |
438229 |
ttagagtccaaacactaaatgttgtgtca |
438201 |
T |
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