View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15137_low_12 (Length: 236)
Name: NF15137_low_12
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 13459527 - 13459731
Alignment:
| Q |
14 |
agatgaagatgccaaggagaaataacaacatcgatgaaaataaagacaggctcagtgatttatgtgattaccttttaattcacatactctcctttttgcg |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13459527 |
agatgaagatgccaagcagaaataacaacatcgatgaaaataaagacaggctcagtgatttatgtgattaccttttaattcacatactctcctttttgcg |
13459626 |
T |
|
| Q |
114 |
gtctaaaatagcagttcaaacttgcatactgtccacaagatggaggaatctctggaagcaacttccctttctttcattatatagctctaatactctcccg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13459627 |
gtctaaaatagcagttcaaacttgcatactgtccacaagatggaggaatctctggaagcaacttccctttctttcattatatagctctaatactctcccg |
13459726 |
T |
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| Q |
214 |
cgtct |
218 |
Q |
| |
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||||| |
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|
| T |
13459727 |
cgtct |
13459731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 13491968 - 13492014
Alignment:
| Q |
127 |
gttcaaacttgcatactgtccacaagatggaggaatctctggaagca |
173 |
Q |
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|
| T |
13491968 |
gttcaaacttgcatactgtccgcgagatggaagaatctgtggaagca |
13492014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 32413581 - 32413705
Alignment:
| Q |
48 |
tgaaaataaagacaggctcagtgatttatgtgattaccttttaattcacatactctcctttttgcggtctaaaatagcagttcaaacttgcatactgtcc |
147 |
Q |
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||||||| ||||||| ||||||||||||| ||||| ||||| ||||||||||||||| |||| | ||| || |||||||||||||| ||||| |
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| T |
32413581 |
tgaaaatcaagacagactcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtcc |
32413680 |
T |
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| Q |
148 |
acaagatggaggaatctctggaagc |
172 |
Q |
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|||||||||| |||||||||||||| |
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| T |
32413681 |
acaagatggaagaatctctggaagc |
32413705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 14288938 - 14288892
Alignment:
| Q |
127 |
gttcaaacttgcatactgtccacaagatggaggaatctctggaagca |
173 |
Q |
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||||||||||||||||| |||| |||||||| ||||||||||||||| |
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| T |
14288938 |
gttcaaacttgcatactctccaaaagatggaagaatctctggaagca |
14288892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 28928502 - 28928457
Alignment:
| Q |
127 |
gttcaaacttgcatactgtccacaagatggaggaatctctggaagc |
172 |
Q |
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||||||||||||||||| ||||| |||||| |||||||||||||| |
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|
| T |
28928502 |
gttcaaacttgcatactctccactcgatggaagaatctctggaagc |
28928457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 7175479 - 7175431
Alignment:
| Q |
124 |
gcagttcaaacttgcatactgtccacaagatggaggaatctctggaagc |
172 |
Q |
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||||||||||||||||| | ||||| ||||||| |||||||||||||| |
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| T |
7175479 |
gcagttcaaacttgcattttatccactagatggaagaatctctggaagc |
7175431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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