View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15137_low_3 (Length: 423)

Name: NF15137_low_3

Description: NF15137

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15137_low_3

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 267; E-Value: 1e-149

Query Start/End: Original strand, 50 - 423

Target Start/End: Original strand, 13871154 - 13871511

Alignment:

Q	50	tgaaattttcattctttgaagttcacaggagcacctatgaagtaacaaatcatatacttactgaatttattcacactgtcaaattattagaacatattca	149	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \| \|
T	13871154	tgaaattttcattctttgaagttcacagtagcacctatgaagtaacaaatcatatacttactgaatttattcacactgtcaaatt--taaaaaaaa----	13871247	T

Q	150	cactatcaaatttaagatagtttttagataatatttctctaagtaaatttacaagcaaaatttaatctgagtacatttaaatgtctttgtcgcccaaaca	249	Q
		\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13871248	------caact----gatagtttatagataatatgtctctaagtaaatttacaagcaaaatttaaactgagtacatttaaatgtctttgtcgcccaaaca	13871337	T

Q	250	catgatcaaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatccgtaagtcctggaatataagtcacac	349	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13871338	catgatcaaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagatatcttgtttgttagtaatccgtaagtcctggaatataagtcacac	13871437	T

Q	350	tattggctcatttgcattatattctcttcaatacactttaaagaggttgaatcatcaaatgttactcttcccat	423	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13871438	tattggcacatttgcattatattctcttcaatacactttaaagagtttgaatcatcaaatgttactcttcccat	13871511	T

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Target: chr5; HSP #2

Raw Score: 51; E-Value: 4e-20

Query Start/End: Original strand, 271 - 333

Target Start/End: Complemental strand, 12957543 - 12957481

Alignment:

Q	271	tgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatccgtaagtcct	333	Q
		\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	12957543	tgttaaaactattggaaatacatttagttaagataacttgtttgttagtaatcagtaagtcct	12957481	T

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Target: chr5; HSP #3

Raw Score: 42; E-Value: 0.00000000000001

Query Start/End: Original strand, 2 - 47

Target Start/End: Original strand, 13870689 - 13870734

Alignment:

Q	2	tacggtggctttgatagaggagaagaggcgggaaaatgacattgag	47	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	13870689	tacggtggctttgatagaggagaagaggcgggaaaatgccattgag	13870734	T

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Target: chr5; HSP #4

Raw Score: 42; E-Value: 0.00000000000001

Query Start/End: Original strand, 251 - 324

Target Start/End: Original strand, 13873703 - 13873776

Alignment:

Q	251	atgatcaaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatcc	324	Q
		\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	13873703	atgaccaaagaaaatttcaatgataaaactattggaaattcatttagttaagataatttgtttattagtaatcc	13873776	T

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Target: chr5; HSP #5

Raw Score: 37; E-Value: 0.00000000001

Query Start/End: Original strand, 256 - 324

Target Start/End: Original strand, 13877603 - 13877671

Alignment:

Q	256	caaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagataacttgtttgttagtaatcc	324	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|
T	13877603	caaagaaaatttcaatgataaaactattggaaattcatttagttaagataatttatttattagtaatcc	13877671	T

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