View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15137_low_5 (Length: 383)
Name: NF15137_low_5
Description: NF15137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15137_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 39735274 - 39734920
Alignment:
| Q |
19 |
gcattgagtcttattaatatagtaagtgtttgaaaatgcatggatggatgatgtgatttaattactaatttaaacaaaatgttgaacaatagaacaaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39735274 |
gcattgagtcttattaatatagtaagtgtttgaaaatgcatggatggatgatgtgatttaattactaatttaaacaaaatgttgaacaatagaacaaatt |
39735175 |
T |
|
| Q |
119 |
atgctgtgacttgtggggcatgtacaagggtatattgtgggtgtggggtaacacatgtttggttgactggtcaaattaatcagaacagtcaaaggaaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39735174 |
atgctgtgacttgtggggcatgtacaagggtatattgtgggtgtggggtaacacatgtttggttgactggtcaaattaatcagaacagtcaaaggaaaca |
39735075 |
T |
|
| Q |
219 |
tggacaaacaaaaagtaaaaacctatcaccatatgaacatcccaagacacaacaacatccacggtagtatttgttgtttgtttgtattggcatttctgtt |
318 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39735074 |
tagacaaacaaaaagtaaaaacctatcaccatatgaacatcccaagacacaacaacatccacggtagtatttgttgtttgtttgtattggcatttctgtt |
39734975 |
T |
|
| Q |
319 |
aagaaaagagaatgtcattcccacttcttacttccacataatctttgtccctatg |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39734974 |
aagaaaagagaatgtcattcccacttcttacttccacataatctttgtccctatg |
39734920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University