View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15138_low_1 (Length: 348)
Name: NF15138_low_1
Description: NF15138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15138_low_1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 47339264 - 47339592
Alignment:
| Q |
18 |
tcaggaacactaagaattcgcttatcaattggattgataggactagagcttacaagattgtgccatgagttagtgaaatcaaatttgattcaacttatta |
117 |
Q |
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| T |
47339264 |
tcaggaacaccaagaattcgcttatcaattggattgataggactagagcttacaagattgtgccatgagtgagtgaaatcaaatttgatccaacttatta |
47339363 |
T |
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| Q |
118 |
tcgttctactttcatcagttagtttgttttctttatttatcatctagaataagtaagattcgagggagaattgtgatttaataaaatgagattgtccatc |
217 |
Q |
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| T |
47339364 |
tcgttctactttcatcagttagtttgttttctttatttatcatctagaataagtaagattcgagggagaattgtgatttaataaaatgagattgtctatc |
47339463 |
T |
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| Q |
218 |
atttatgttgtgagttctgttttttctgctgtactaataatgttgttgtactgggagatcaactatctgtttttacgaatttttgactcagctatccagt |
317 |
Q |
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| T |
47339464 |
atttatgttgtgagttctgttttttctgctgtactaataatgttgttgtactgggagatcaac--tctgtttttatgaatttttgactcagctatccagt |
47339561 |
T |
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| Q |
318 |
ttcattacattagaatggggttgttgtttgc |
348 |
Q |
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| T |
47339562 |
ttcattacattagaatggggttgttgtttgc |
47339592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 3818613 - 3818277
Alignment:
| Q |
18 |
tcaggaacactaagaattcgcttatcaattggattgataggactagagcttacaagattgtgccatgagttagtgaaatcaaatttgattcaacttatta |
117 |
Q |
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| T |
3818613 |
tcaggaacactaagaattcgcttatcaattggattgataggactagagcttacaagattgtgccatgagtgagtgaaatcaaatttgattcaacttatta |
3818514 |
T |
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| Q |
118 |
tcgttctactttcatcagttagtttgttttctttatttatcatctagaataagtaagattcgagggagaattgtgatttaataaaatgagat------tg |
211 |
Q |
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| T |
3818513 |
tcgttctactttcatcagttagtttgttttctttatttatcatctagaataagtaagattcgacggagaattgtgatttaataaaatgagattgtctatg |
3818414 |
T |
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| Q |
212 |
tccatcatttatgttgtgagttctgttttttctgctgtactaataatgttgttgtactgggagatcaactatctgtttttacgaatttttgactcagcta |
311 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||| |
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| T |
3818413 |
tctatcatttatgttgtgagttctgttttttctgctgtactaataatgttgttgtactaggagatcaactctgtgtttttatgaatttttgactcagcta |
3818314 |
T |
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| Q |
312 |
tccagtttcattacattagaatggggttgttgtttgc |
348 |
Q |
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| T |
3818313 |
tccagtttcattacattagaatggggttgttgtttgc |
3818277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 47347734 - 47347801
Alignment:
| Q |
18 |
tcaggaacactaagaattcgcttatcaattggattgataggactagagcttacaagattgtgccatga |
85 |
Q |
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|||| ||||| ||||||||||| || | |||||| |||| |||||||||||||||||||| |||||| |
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| T |
47347734 |
tcagaaacaccaagaattcgctcataagttggatagataaaactagagcttacaagattgttccatga |
47347801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 5399463 - 5399405
Alignment:
| Q |
27 |
ctaagaattcgcttatcaattggattgataggactagagcttacaagattgtgccatga |
85 |
Q |
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| T |
5399463 |
ctaagaattcgttcattagttggattgataagacaaaagcttacaagattgtgccatga |
5399405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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