View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15138_low_2 (Length: 280)

Name: NF15138_low_2
Description: NF15138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15138_low_2
NF15138_low_2
[»] chr7 (8 HSPs)
chr7 (1-273)||(29460262-29460534)
chr7 (73-226)||(43970045-43970198)
chr7 (85-245)||(41605351-41605511)
chr7 (98-226)||(513855-513983)
chr7 (73-226)||(31802468-31802621)
chr7 (97-201)||(18221418-18221522)
chr7 (73-201)||(27745655-27745783)
chr7 (91-151)||(47251556-47251616)
[»] scaffold0996 (1 HSPs)
scaffold0996 (75-226)||(1475-1626)
[»] chr5 (3 HSPs)
chr5 (134-269)||(13020906-13021045)
chr5 (134-269)||(13092430-13092569)
chr5 (73-226)||(10813070-10813223)
[»] chr1 (7 HSPs)
chr1 (97-226)||(33978131-33978260)
chr1 (73-154)||(38599102-38599183)
chr1 (73-154)||(12458712-12458792)
chr1 (73-154)||(49508616-49508697)
chr1 (85-153)||(317372-317440)
chr1 (73-201)||(27643294-27643422)
chr1 (73-226)||(28037648-28037801)
[»] chr2 (2 HSPs)
chr2 (73-201)||(36756881-36757009)
chr2 (91-154)||(37670652-37670715)
[»] chr4 (4 HSPs)
chr4 (97-226)||(3914766-3914894)
chr4 (97-153)||(3925864-3925920)
chr4 (77-201)||(54421338-54421462)
chr4 (97-201)||(38761333-38761437)
[»] chr3 (7 HSPs)
chr3 (73-154)||(4741515-4741596)
chr3 (73-226)||(52964075-52964228)
chr3 (73-114)||(30355708-30355749)
chr3 (73-226)||(54548252-54548405)
chr3 (73-136)||(13102151-13102214)
chr3 (73-110)||(43892229-43892266)
chr3 (73-153)||(19671283-19671363)
[»] scaffold0839 (1 HSPs)
scaffold0839 (73-154)||(4560-4641)
[»] scaffold0010 (1 HSPs)
scaffold0010 (73-154)||(236581-236662)
[»] chr6 (1 HSPs)
chr6 (73-154)||(16863316-16863396)
[»] chr8 (1 HSPs)
chr8 (73-201)||(16484079-16484207)
[»] scaffold0024 (1 HSPs)
scaffold0024 (97-151)||(69003-69057)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 29460262 - 29460534
Alignment:
Q  1 ttcgatggaactgtttcatagaaaatggagtgtctaatgaatataggaatataaatagtgtctannnnnnncttttgagcaaaggcaaaattaatacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  29460262 ttcgatggaactgtttcatagaaaatggagtgtctaatgaatacaggaatataaatagtgtctatttttttcttttgagcaaaggcaaaattaatacatt 29460361  T
Q  101 tcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctctaacaatactataggcaaccttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  29460362 tcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctctagcaatactatgggcaaccttat 29460461  T
Q  201 tgactttcctccaaacataagacactcaaagtcagaattatctaagagattcctacattgtgagatgatgtcc 273  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  29460462 tggctttcctccgaacataagacactcaaagtcagaattatctaagagattcctacattgtgatatgaggtcc 29460534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 43970198 - 43970045
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    |||| ||||||||||| |||||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||  ||||| |     
T  43970198 tttttagcaaaggcaagattaatgcatttcgttcataatcaaagggtacaaagtagatggtacatcatagaaaatatgggggctaggattggataaggac 43970099  T
Q  173 gctctaacaatactataggcaaccttattgactttcctccaaacataagacact 226  Q
    |||||| |||||||||  |||||||||||  ||| ||| | |||||| ||||||    
T  43970098 gctctagcaatactatgagcaaccttatttgcttgcctacgaacatatgacact 43970045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 245
Target Start/End: Complemental strand, 41605511 - 41605351
Alignment:
Q  85 gcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctctaacaata 184  Q
    |||| |||||| ||||||||||||||| || ||||| |||||||||||||||| ||| |||||||||||| | |||||  ||||| | |||||| |||||    
T  41605511 gcaagattaatgcatttcattcataatcaa-gggtacaaagtagatggtacattataaaaaatatgggggttgagattggataaggacgctctagcaata 41605413  T
Q  185 ctataggcaaccttattgactttcctccaaacataagacact-caaagtcagaattatctaa 245  Q
    ||||  |||||||||||  | | |||| ||||||| |||||| ||||||| || ||||||||    
T  41605412 ctatgagcaaccttatttgcctacctctaaacatacgacactacaaagtcggatttatctaa 41605351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 513983 - 513855
Alignment:
Q  98 atttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctctaacaatactataggcaacct 197  Q
    ||||||||| ||||||| | ||| |||||||| |||||| |||  ||||||||| || || ||| | ||||| |||||||| |||||||||  ||||||     
T  513983 atttcattcgtaattaaggagtacaaagtagaaggtacaacattaaaaatatggaggttaggatgacataaggaagctctagcaatactatgagcaaccc 513884  T
Q  198 tattgactttcctccaaacataagacact 226  Q
    ||||  ||| |||||||||||| ||||||    
T  513883 tattagcttgcctccaaacatacgacact 513855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 31802621 - 31802468
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    ||||||| |||||| | |||||  |||| |||| |||||||| | ||| |||||||| || ||| |||  || |||||| || || ||| | ||||| ||    
T  31802621 ttttgagtaaaggctatattaagccattccattaataattaaggagtacaaagtagaaggcacaacattaaatatatggaggctaggatgacataaggaa 31802522  T
Q  173 gctctaacaatactataggcaaccttattgactttcctccaaacataagacact 226  Q
    |||||| |||||||||  |||||||||||  ||| ||||| |||||| ||||||    
T  31802521 gctctagcaatactatgagcaaccttattagcttgcctccgaacatacgacact 31802468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 18221418 - 18221522
Alignment:
Q  97 catttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctctaacaatactataggcaacc 196  Q
    ||||| |||||||| ||||| ||| | ||||||||||||||||| |||| ||| |||| || | | | ||||| | |||||| ||||| |||  ||||||    
T  18221418 cattttattcataaataaagagtacatagtagatggtacatcattgaaagtataggggctagggtgagataaggatgctctagcaatagtatgagcaacc 18221517  T
Q  197 ttatt 201  Q
    |||||    
T  18221518 ttatt 18221522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 27745655 - 27745783
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    |||||||||||| |||||||| | ||||| ||| | || ||||| ||| | |||||||||||||||||  |||| || |||| || | | | ||||| |     
T  27745655 ttttgagcaaagacaaaattagtgcattttatttagaaataaagagtacatagtagatggtacatcattaaaaacataggggctagggtgagataaggat 27745754  T
Q  173 gctctaacaatactataggcaaccttatt 201  Q
    |||||| | |||||||  |||||||||||    
T  27745755 gctctagcgatactatgagcaaccttatt 27745783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 47251616 - 47251556
Alignment:
Q  91 ttaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgg 151  Q
    ||||| ||||| |||||||||||||| ||| | | | | ||||||||||||||||||||||    
T  47251616 ttaatgcattttattcataattaaagagtacacaatgggtggtacatcatagaaaatatgg 47251556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 1475 - 1626
Alignment:
Q  75 ttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagc 174  Q
    |||| ||||||| | |||||  |||||||||||||||||| | ||| |||||||| |||||| |||  |||||||||||| || ||| | ||||| ||||    
T  1475 ttgaacaaaggctatattaagtcatttcattcataattaaggagtacaaagtagaaggtacaacattaaaaatatgggggctaggatgacataaggaagc 1574  T
Q  175 tctaacaatactataggcaaccttattgactttcctccaaacataagacact 226  Q
    |||| |||||||||  |||||| ||||  ||| ||||| |||||| ||||||    
T  1575 tctagcaatactatgagcaaccctattagcttgcctccgaacatacgacact 1626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 269
Target Start/End: Original strand, 13020906 - 13021045
Alignment:
Q  134 acatcatagaaaatatgggggataagattaaataagaaagctctaacaatactataggcaaccttattgactttcctccaaacataagacact-caaagt 232  Q
    ||||||||||||||||||||| || ||||  ||||| | |||||| |||||||||| |||||||||||  ||| ||||| |||||| |||||| ||||||    
T  13020906 acatcatagaaaatatgggggttaggattggataaggacgctctagcaatactataagcaaccttatttgcttgcctccgaacatacgacactacaaagt 13021005  T
Q  233 cagaattatct---aagagattcctacattgtgagatgat 269  Q
    | |  ||||||   || ||||||||||||||||| |||||    
T  13021006 cgggtttatctaacaatagattcctacattgtgatatgat 13021045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 269
Target Start/End: Original strand, 13092430 - 13092569
Alignment:
Q  134 acatcatagaaaatatgggggataagattaaataagaaagctctaacaatactataggcaaccttattgactttcctccaaacataagacact-caaagt 232  Q
    ||||||||||||||||||||| || ||||  ||||  | |||||| |||||||||| |||||||||||  ||| ||||| |||||| |||||| ||||||    
T  13092430 acatcatagaaaatatgggggttaggattggataacgacgctctagcaatactataagcaaccttatttgcttgcctccgaacatacgacactacaaagt 13092529  T
Q  233 cagaattatct---aagagattcctacattgtgagatgat 269  Q
    | |  ||||||   || ||||||||||||||||| |||||    
T  13092530 cgggtttatctaacaatagattcctacattgtgatatgat 13092569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 10813070 - 10813223
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    ||||||||||||||||||||||| |||||||||||  |  |||| ||| ||||| || ||||||  ||| |||| ||||||| || ||| | ||||| ||    
T  10813070 ttttgagcaaaggcaaaattaatgcatttcattcaagaacaaagagtacaaagttgaaggtacactataaaaaagatgggggctaggatgagataaggaa 10813169  T
Q  173 gctctaacaatactataggcaaccttattgactttcctccaaacataagacact 226  Q
    |||||| | |||||||  |||||| ||||  ||| ||||| || ||| ||||||    
T  10813170 gctctagctatactatgagcaaccctattagcttgcctccgaatatatgacact 10813223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 33978131 - 33978260
Alignment:
Q  97 catttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctctaacaatactataggcaacc 196  Q
    |||||||||||||||||| | ||| |||||||| |||||| |||  |||||||||||| || ||| | ||||| |||||||| |||||||||  ||||||    
T  33978131 catttcattcataattaaggagtacaaagtagaaggtacaacattaaaaatatgggggctaggatgacataaggaagctctagcaatactatgagcaacc 33978230  T
Q  197 ttattgactttcctccaaacataagacact 226  Q
     ||||  ||| ||||| |||||| ||||||    
T  33978231 ctattagcttgcctccgaacatatgacact 33978260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 38599183 - 38599102
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatggggg 154  Q
    |||| |||||| | ||| ||||| ||||||||||| ||||||||||||||||||||  ||||||||| | ||||||||||||    
T  38599183 tttttagcaaaagtaaagttaattcatttcattcacaattaaagggtataaagtagtcggtacatcacaaaaaatatggggg 38599102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 12458712 - 12458792
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatggggg 154  Q
    ||||||||||||| ||| ||||| ||||||||||||||| ||||  || ||||||   ||||||| ||||||||||||||||    
T  12458712 ttttgagcaaagg-aaagttaatgcatttcattcataatcaaagaatacaaagtaagcggtacattatagaaaatatggggg 12458792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 49508697 - 49508616
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatggggg 154  Q
    ||||||||||   |||||||||| ||| |||||||  | ||||| ||  ||| |||||||||||||||||||||||||||||    
T  49508697 ttttgagcaacatcaaaattaattcatatcattcaataataaagtgttcaaactagatggtacatcatagaaaatatggggg 49508616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 317372 - 317440
Alignment:
Q  85 gcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggg 153  Q
    |||| |||||| ||||||||| ||||| |||| ||| |||||||||||||||||||   ||||||||||    
T  317372 gcaagattaatgcatttcatttataatcaaagagtacaaagtagatggtacatcatgacaaatatgggg 317440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 27643294 - 27643422
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    |||||||||||| |||||||| | ||||||||| | || ||||| ||| | |||||||||||||||||  |||| || |||  || | | | ||||| |     
T  27643294 ttttgagcaaagacaaaattagtgcatttcatttagaaataaagagtacatagtagatggtacatcattaaaaacatagggactagggtgagataaggat 27643393  T
Q  173 gctctaacaatactataggcaaccttatt 201  Q
    |||||| |||||||||  |||||||||||    
T  27643394 gctctagcaatactatgagcaaccttatt 27643422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 28037801 - 28037648
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    |||| |||||||||||||||||| |||||||||||  |  |||| ||| ||| | || ||||||  ||| |||| ||||||| || ||| | ||||  ||    
T  28037801 tttttagcaaaggcaaaattaatgcatttcattcaagaacaaagagtacaaatttgaaggtacactataaaaaagatgggggctaggatgagataaagaa 28037702  T
Q  173 gctctaacaatactataggcaaccttattgactttcctccaaacataagacact 226  Q
    |||||| | |||||||  |||||| |||| |||| ||||| || ||| ||||||    
T  28037701 gctctagctatactatgagcaaccctattaacttgcctcctaatatacgacact 28037648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 36756881 - 36757009
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    ||||||||||| |||| |||||| ||| | || || ||| |||| ||||||||||| || ||||| |||||||||||||||| || |||   ||||| ||    
T  36756881 ttttgagcaaaagcaagattaattcatataatccaaaatcaaagagtataaagtagttgttacatgatagaaaatatgggggctaggatgtgataaggaa 36756980  T
Q  173 gctctaacaatactataggcaaccttatt 201  Q
    |||||| |||||||||  ||||| |||||    
T  36756981 gctctagcaatactatgagcaactttatt 36757009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 37670652 - 37670715
Alignment:
Q  91 ttaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatggggg 154  Q
    ||||| |||||||| ||||||||||||||| |||||||  ||||||||||| ||||||||||||    
T  37670652 ttaattcatttcatccataattaaagggtacaaagtagtcggtacatcataaaaaatatggggg 37670715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 3914894 - 3914766
Alignment:
Q  97 catttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctctaacaatactataggcaacc 196  Q
    |||||||||||||||||||| |||||||||||| |||||| |||  ||||| | |||| || ||| | ||||  |||||||  ||||| |||| ||||||    
T  3914894 catttcattcataattaaagagtataaagtagacggtacaacattaaaaatct-ggggctaggatgacataaagaagctctggcaatattataagcaacc 3914796  T
Q  197 ttattgactttcctccaaacataagacact 226  Q
    ||||| | || || ||||||||| ||||||    
T  3914795 ttatttatttgcccccaaacatacgacact 3914766  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 3925920 - 3925864
Alignment:
Q  97 catttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggg 153  Q
    |||||||||||||||||||| ||||||| |||| |||||| |||  |||||||||||    
T  3925920 catttcattcataattaaagagtataaaatagacggtacaacattaaaaatatgggg 3925864  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 54421338 - 54421462
Alignment:
Q  77 gagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctc 176  Q
    ||||||| | || |||||| ||| |||| || ||| |||| ||| ||||||| || ||||| |||||||||||||||| || |||   ||||| ||||||    
T  54421338 gagcaaaaggaagattaattcatatcatccaaaatcaaagagtacaaagtagttgttacatgatagaaaatatgggggctaggatgtgataaggaagctc 54421437  T
Q  177 taacaatactataggcaaccttatt 201  Q
    || |||||||||   ||||||||||    
T  54421438 tagcaatactatgaccaaccttatt 54421462  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 38761333 - 38761437
Alignment:
Q  97 catttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaagctctaacaatactataggcaacc 196  Q
    |||||||||||||| ||||| ||| |  |||||||||||||||| ||||| || | || || | | | ||||| | |||||| |||||||||  ||||||    
T  38761333 catttcattcataaataaagagtacatggtagatggtacatcattgaaaacatagaggctagggtgagataaggatgctctagcaatactatgagcaacc 38761432  T
Q  197 ttatt 201  Q
    |||||    
T  38761433 ttatt 38761437  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 4741515 - 4741596
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatggggg 154  Q
    |||| ||||||  |||| ||||| |||||||||||||||||||  |||||||||||  ||||||||| | ||||||||||||    
T  4741515 tttttagcaaaaacaaagttaattcatttcattcataattaaaaagtataaagtagtcggtacatcacaaaaaatatggggg 4741596  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 52964075 - 52964228
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    |||| |||||||||||||||||| |||||||||||  |  |||| ||| ||||| |||||||||  ||| |||| ||||||| || ||| | ||||| ||    
T  52964075 tttttagcaaaggcaaaattaatgcatttcattcaagaacaaagagtacaaagttgatggtacactataaaaaagatgggggctaggatgagataaggaa 52964174  T
Q  173 gctctaacaatactataggcaaccttattgactttcctccaaacataagacact 226  Q
    | |||| | |||||||  |||||| |||| |||| ||||| || ||| ||||||    
T  52964175 gatctagctatactatgagcaaccctattaacttgcctcctaatatacgacact 52964228  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 30355749 - 30355708
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaa 114  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  30355749 ttttgagcaaaggtaaaattaatatatttcattcataattaa 30355708  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 54548252 - 54548405
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    |||| ||||||||||||||||||  ||||||||||  |  |||| ||| ||||| |||||||||  ||| |||| ||||||| || ||| | ||||| ||    
T  54548252 tttttagcaaaggcaaaattaatggatttcattcaagaacaaagagtacaaagttgatggtacactataaaaaagatgggggctaggatgagataaggaa 54548351  T
Q  173 gctctaacaatactataggcaaccttattgactttcctccaaacataagacact 226  Q
    |||||| | |||||||  |||||  |||| |||| ||||| || ||| ||||||    
T  54548352 gctctagctatactatgagcaactctattaacttgcctcctaatatacgacact 54548405  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 13102151 - 13102214
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtaca 136  Q
    |||| |||||||||||||||||| | |||||||||| |  |||| ||||||||||| |||||||    
T  13102151 tttttagcaaaggcaaaattaatgcgtttcattcatgagcaaagagtataaagtagttggtaca 13102214  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 43892266 - 43892229
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataa 110  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  43892266 ttttgagcaaaggcaaacttactacatttcattcataa 43892229  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 19671363 - 19671283
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggg 153  Q
    ||||||||||| |||||| |||| ||||||||| || | |||  |||| |||  ||||||||||||||  |||||||||||    
T  19671363 ttttgagcaaatgcaaaactaattcatttcattaatgagtaataggtacaaataagatggtacatcatgaaaaatatgggg 19671283  T

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Target: scaffold0839 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 4560 - 4641
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatggggg 154  Q
    |||||||||| |||||||||||| ||| |||||||  | ||||| ||  ||| |||| ||||||||| ||||||||||||||    
T  4560 ttttgagcaacggcaaaattaattcatatcattcaataataaagtgttcaaactagacggtacatcagagaaaatatggggg 4641  T

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Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 236581 - 236662
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatggggg 154  Q
    |||||||||| | |||||||||| ||| |||||||  | ||||| ||  ||| |||| ||||||||||||||||||||||||    
T  236581 ttttgagcaacgtcaaaattaattcatatcattcaataataaagtgttcaaactagacggtacatcatagaaaatatggggg 236662  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 16863396 - 16863316
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatggggg 154  Q
    ||||||||||||| ||| ||||| ||||||||||||||| ||||  || ||||||   ||||||| ||||||||||||||||    
T  16863396 ttttgagcaaagg-aaagttaatgcatttcattcataatcaaagaatacaaagtaagcggtacattatagaaaatatggggg 16863316  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 16484079 - 16484207
Alignment:
Q  73 ttttgagcaaaggcaaaattaatacatttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgggggataagattaaataagaaa 172  Q
    |||||||||||| |||||||| | ||||||||| | || ||||| ||| | |||||||||||||||||  |||| || |||  || | | | ||||| |     
T  16484079 ttttgagcaaagacaaaattagtgcatttcatttagaaataaagagtacatagtagatggtacatcattaaaaacatagggactagggtgagataaggat 16484178  T
Q  173 gctctaacaatactataggcaaccttatt 201  Q
    |||||| |||||||||  |||||||||||    
T  16484179 gctctagcaatactatgagcaaccttatt 16484207  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 69003 - 69057
Alignment:
Q  97 catttcattcataattaaagggtataaagtagatggtacatcatagaaaatatgg 151  Q
    |||||||| ||||||||||||||| ||||||   ||||||||||| |||||||||    
T  69003 catttcatgcataattaaagggtaaaaagtaatcggtacatcataaaaaatatgg 69057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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