View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15138_low_3 (Length: 277)
Name: NF15138_low_3
Description: NF15138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15138_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 31411960 - 31411722
Alignment:
| Q |
17 |
aaaagatacatgtaattgatatctaannnnnnncaattaagataaaaattgttaccaaacatttctattttggtcatatgaatttattagctatccgtaa |
116 |
Q |
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| T |
31411960 |
aaaagatacatgtaattgatatctaatttttttcaattaagataaaaattgttaccaaacatttctattttggtcatatgaatttattagctatccgtta |
31411861 |
T |
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| Q |
117 |
taagctcaaaattatgtcttgtcaatgagagcctatattgttgttacccaacatatgtgtaatcaatcatgttcccttttctctttgcaatacggttatt |
216 |
Q |
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| T |
31411860 |
taagctcaaaattttgtcttgtcaatgagagcctatattgttgttacccaacatatgtgtaatcaatcatgttcccttttctctttgcaatacggttatt |
31411761 |
T |
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| Q |
217 |
cagaaattaaatcggtaatgtggtatcaatacaaaaagg |
255 |
Q |
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| T |
31411760 |
cagaaattaaatcggtaatgtggtatcaatacaaaaagg |
31411722 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 19790248 - 19790293
Alignment:
| Q |
64 |
attgttaccaaacatttctattttggtcatatgaatttattagcta |
109 |
Q |
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| T |
19790248 |
attgttaccaaacaaatctattttggtcatatgaacttattagcta |
19790293 |
T |
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