View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15139_high_1_N (Length: 418)
Name: NF15139_high_1_N
Description: NF15139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15139_high_1_N |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 127 - 418
Target Start/End: Original strand, 11224422 - 11224709
Alignment:
| Q |
127 |
agtggactgcttttgtgcatcactataaaggtgacaaaatgaaggtatagaaatttattttacaagcattcttttagaatctataaagatactaaaatgc |
226 |
Q |
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| T |
11224422 |
agtggactacttttgtgcatcactataaaggtgacaaaatgaaggtatagaaatttattttacaagcattctcttagaatctataaagatactaaaatgt |
11224521 |
T |
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| Q |
227 |
ccttataatatgtctttgacacttgagaatatttatttacacaatctcatattct-aaaaactttgtcatacaagtattaactatcatagtttaaaattg |
325 |
Q |
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| T |
11224522 |
ccttataatatgtctttgacac-cgagaatatttatttacacaatctcatattctaaaaaactatgtcatacaa----taactatcatagtttaaaattg |
11224616 |
T |
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| Q |
326 |
tagcaacaaagtgagaagaataccgaaaatcgtaagaagcttaaagtcccacatgttggtggtagtaggagcaacgcaagaaggggtcgtcta |
418 |
Q |
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| T |
11224617 |
ttgaaacaaagtgagaagaataccgaaaatcgtaagaagcttaaagtcccacatgctggtggtagtaggagcaacgcaagaaggggtcgtcta |
11224709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 11228449 - 11228568
Alignment:
| Q |
13 |
taggggatagatggagatcctataaatatagcttaaggaatgcatacttctaccccaagaaaactaaagaagaaatacttgctaagccaccacctccagg |
112 |
Q |
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| T |
11228449 |
taggggatagatggagatcctataaatatagcttaaggaatacatacttctaccccaagaaaactaaagaagaaatacttgctaagccaccacctccagg |
11228548 |
T |
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| Q |
113 |
tgtgggtcctgttgagtgga |
132 |
Q |
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| T |
11228549 |
tgtgggtcctgttgagtgga |
11228568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 13551975 - 13552007
Alignment:
| Q |
17 |
ggatagatggagatcctataaatatagcttaag |
49 |
Q |
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| T |
13551975 |
ggatagatggagatcctataaatatagcttaag |
13552007 |
T |
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