View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15139_low_1 (Length: 520)
Name: NF15139_low_1
Description: NF15139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15139_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 11228292 - 11228568
Alignment:
| Q |
1 |
gatcaatggcagtgtattgaggttattattttgactttgttaannnnnnnc-gtttgttgatgtgccttttatatcaaaatattgacctttaaatacatt |
99 |
Q |
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| T |
11228292 |
gatcaatggcagtgtatcgaggttattattttgactttgttaatttttgtttgtttgttgatgtgccttttatatcaaaatattgacctttaaatacatt |
11228391 |
T |
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| Q |
100 |
tctagaaacattttgagtttgactatgctgatggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaatatagcttaaggaatgc |
199 |
Q |
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| T |
11228392 |
tttagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaatatagcttaaggaatac |
11228491 |
T |
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| Q |
200 |
atacttctaccccaagaaaactaaagaagaaatacttgctaagccaccacctccaggtgtgggtcctgttgagtgga |
276 |
Q |
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| T |
11228492 |
atacttctaccccaagaaaactaaagaagaaatacttgctaagccaccacctccaggtgtgggtcctgttgagtgga |
11228568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 271 - 520
Target Start/End: Original strand, 11224422 - 11224666
Alignment:
| Q |
271 |
agtggactgcttttgtgcatcactataaaggtgacaaaatgaaggtatagaaatttattttacaagcattcttttagaatctataaagatactaaaatgc |
370 |
Q |
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| T |
11224422 |
agtggactacttttgtgcatcactataaaggtgacaaaatgaaggtatagaaatttattttacaagcattctcttagaatctataaagatactaaaatgt |
11224521 |
T |
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| Q |
371 |
ccttataatatgtctttgacacttgagaatatttatttacacaatctcatattctaaaaaactttgtcatacaagtattaactatcatagtttaaaattg |
470 |
Q |
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| T |
11224522 |
ccttataatatgtctttgacac-cgagaatatttatttacacaatctcatattctaaaaaactatgtcatacaa----taactatcatagtttaaaattg |
11224616 |
T |
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| Q |
471 |
tagcaacaaagtgagaagaataccgaaaatcgtcagaagcttaaagtccc |
520 |
Q |
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| T |
11224617 |
ttgaaacaaagtgagaagaataccgaaaatcgtaagaagcttaaagtccc |
11224666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 13551815 - 13552007
Alignment:
| Q |
1 |
gatcaatggcagtgtattgaggttattattttgactttgttaannnnnnncgtttgttgatgtgccttttatatcaaaatattgacctttaaatacattt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
13551815 |
gatcaatggcagtgtattgaggtttatattttgactttgttaattttttttgtttgttgatgcgctttttatatcaaaatattgacctttaaatacattt |
13551914 |
T |
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| Q |
101 |
ctagaaacattttgagtttgactatgctgatggaatcaaatgggtgaggagtacactaggggatagatggagatcctataaatatagcttaag |
193 |
Q |
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| T |
13551915 |
ctagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacactagcggatagatggagatcctataaatatagcttaag |
13552007 |
T |
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