View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1513_high_1 (Length: 549)
Name: NF1513_high_1
Description: NF1513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1513_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Original strand, 39839171 - 39839644
Alignment:
| Q |
17 |
accttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaatt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839171 |
accttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaatt |
39839270 |
T |
|
| Q |
117 |
caacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839271 |
caacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgct |
39839370 |
T |
|
| Q |
217 |
accggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839371 |
accggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaatt |
39839470 |
T |
|
| Q |
317 |
ttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcg |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839471 |
ttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcg |
39839570 |
T |
|
| Q |
417 |
tagctcggtaggttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattcttttttaacttttgtg |
490 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839571 |
tagctcggtaagttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattcttttttaacttttgtg |
39839644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 63 - 490
Target Start/End: Complemental strand, 39733741 - 39733314
Alignment:
| Q |
63 |
attcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattg |
162 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733741 |
attcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattg |
39733642 |
T |
|
| Q |
163 |
tggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggacttt |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733641 |
tggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggacttt |
39733542 |
T |
|
| Q |
263 |
ctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaat |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733541 |
ctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaat |
39733442 |
T |
|
| Q |
363 |
ggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgct |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
39733441 |
ggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatatgtgtcagtgct |
39733342 |
T |
|
| Q |
463 |
tcatagtaattcttttttaacttttgtg |
490 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
39733341 |
tcatagtaattcttttttaacttttgtg |
39733314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 31290718 - 31290616
Alignment:
| Q |
17 |
accttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||| |||| ||||| |
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| T |
31290718 |
accttccaatgcctgaagatttccatgaatacccttcaaagaaacagttcataaactaccttgaaaactatccgaacaaatttgaaatcgacccacaatt |
31290619 |
T |
|
| Q |
117 |
caa |
119 |
Q |
| |
|
||| |
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|
| T |
31290618 |
caa |
31290616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 31290084 - 31290181
Alignment:
| Q |
17 |
accttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaa |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
31290084 |
accttccaatgcttgaagatttccctgaatacccttcaaagaaacagttcataaactatcttgtaaactatgctaacaaatttgaaatctccccgcaa |
31290181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 31290472 - 31290504
Alignment:
| Q |
185 |
ttgagtatatttgtaggtggcttgttgttgcta |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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| T |
31290472 |
ttgagaatatttgtaggtggcttgttgttgcta |
31290504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 40 - 426
Target Start/End: Complemental strand, 29857836 - 29857435
Alignment:
| Q |
40 |
cctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgcta |
139 |
Q |
| |
|
|||||||| || |||||||||| ||||||| ||| |||||| ||| || || | |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29857836 |
cctgaatatccaacaaagaaacagttcataaactatcttgaatcctacgcgaaacactttgaaatcaacccgcgattcaacgagtgtgttcaatctgcta |
29857737 |
T |
|
| Q |
140 |
agtatgatgaaaccagtggattgtggagggtcaagac------------aaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
227 |
Q |
| |
|
| |||||||| || | ||| |||||||| || |||| |||||||||||||||||||||||||| |||||| |||||||| || || || |
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| T |
29857736 |
aatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagttgagtatatttgtaggtcgcttgtggttgctactggtgagaa |
29857637 |
T |
|
| Q |
228 |
tgctgagtgtgttactcctgaaattgaaggact---ttctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaagga |
324 |
Q |
| |
|
||| ||||||||| ||| | |||||||| | | ||||||||| |||||| || || ||||||||||||| || ||||| ||| |||| ||| |
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|
| T |
29857636 |
tgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaagggtgaaattattcatgcttgtgattataaatcaggtgaaagttttagaggg |
29857537 |
T |
|
| Q |
325 |
aagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcgg |
424 |
Q |
| |
|
||||||||| | |||||||| ||||| ||||||||||||||||| || ||||||||| |||||||| |||| | |||||| || ||| |||||||||||| |
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| T |
29857536 |
aagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctttgcaatcataatgcatcaccttctattgttcttcgtagctcgg |
29857437 |
T |
|
| Q |
425 |
ta |
426 |
Q |
| |
|
|| |
|
|
| T |
29857436 |
ta |
29857435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 17407974 - 17408021
Alignment:
| Q |
180 |
tgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
17407974 |
tgaagttgagtatatttgtaggtggcttgtggttgctaccggtgaaaa |
17408021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 17408116 - 17408175
Alignment:
| Q |
322 |
ggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt |
381 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||| | || ||||||||| |
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|
| T |
17408116 |
ggaaaaaatgttcttgttgttggatgtggaaattctggcatggaagtttctcttgatctt |
17408175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 471
Target Start/End: Complemental strand, 19040219 - 19040190
Alignment:
| Q |
442 |
tctggtatctgtgtcagtgcttcatagtaa |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
19040219 |
tctggtatctgtgtcagtgcttcatagtaa |
19040190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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