View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1513_high_10 (Length: 250)
Name: NF1513_high_10
Description: NF1513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1513_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43163625 - 43163865
Alignment:
| Q |
1 |
caaacagtttcacaagtacttacactttttccttttccaaagatatccagatgatgtttatgacagaacatggacaccttataactcaattgattggnnn |
100 |
Q |
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| T |
43163625 |
caaactgtttcacaagtacttacactttttccttttccaaagatatccagatgatgtttatgacagaacatggacaccttataactcaattgattggaaa |
43163724 |
T |
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| Q |
101 |
nnnntaaacacttcactcaccatagaccaagcaccttcattcagctttacgccggtaccaccctccaatgtgatgcgaacaacatcaattccagcaaatg |
200 |
Q |
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| T |
43163725 |
aaaatagacacttcactcaccatagaccaagcaccttcattcagctttacgccggtaccaccctccaatgtgatgcgaacaacagcaattccagcaaatg |
43163824 |
T |
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| Q |
201 |
ccagtgacaacatggaattttccttccttcccaagtataat |
241 |
Q |
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| T |
43163825 |
ccagtgacaacatggaattttccttccttcccaagtataat |
43163865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 43173306 - 43173541
Alignment:
| Q |
9 |
ttcacaagtacttacactttttccttttccaaagatatccagatgatgtttatgacagaacatggacaccttataactcaattgattggnnnnnnntaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| | | |
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| T |
43173306 |
ttcacaagtacttacactttttccttttccaaagatatccagatgatatttatgacagaacatggacatcttataattcaattgattgggaaaaaatcga |
43173405 |
T |
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| Q |
109 |
cacttcactcaccatagacca---agcaccttcattcagctttacgccggtaccaccctccaatgtgatgcgaacaacatcaattccagcaaatgccagt |
205 |
Q |
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| T |
43173406 |
ctcttcactcaccatggaccaaagagcacctccattcaactttttaatggcaccaccctccactgtcatgagaacaacagcaattccagcaaatgccagt |
43173505 |
T |
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| Q |
206 |
gacaacatggaattttccttccttcccaagtataat |
241 |
Q |
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| T |
43173506 |
gacaacatggaatattccttccttcccaagtataat |
43173541 |
T |
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