View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1513_high_4 (Length: 398)
Name: NF1513_high_4
Description: NF1513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1513_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 34556128 - 34556495
Alignment:
| Q |
17 |
acaacaaggatgaaaacttgtaaagatacataaatacacacaacaagcaaactaagccaaattattcattaacttttacgaaattcaaacctacaattta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34556128 |
acaacaaggatgaaaacttgtaaagatacataaatacacacaacaagcaaactaagccaaattattcattaacttttacgaaattcaaacctacaattta |
34556227 |
T |
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| Q |
117 |
gcacgcatgattagaacatcatcattatgatcatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaaactccaattct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34556228 |
gcacgcatgattagaacatcatcattatgatcatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattct |
34556327 |
T |
|
| Q |
217 |
caggaatgtgatattcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttccttccttgtgt |
316 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
34556328 |
caggaatatgatactcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctccaaattgaaccctcctttgcttccttgtgt |
34556427 |
T |
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| Q |
317 |
tcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagatt |
384 |
Q |
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| T |
34556428 |
tcctgcaattccatgcaagtaaacctccatgttatgttcactaacaccactcttcaagtactttgatt |
34556495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 388
Target Start/End: Original strand, 34547634 - 34548006
Alignment:
| Q |
21 |
caaggatgaaaacttgtaaagatacataaatacaca-caacaagcaaactaagccaaattattcattaacttttacgaaattcaaacctacaattta--- |
116 |
Q |
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||||||| ||||||||||||||||||||| ||||| |||| ||||||| | ||||||||| |||||| | ||||||| ||| |||||||| |
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| T |
34547634 |
caaggatacaaacttgtaaagatacataaacacacaacaacggccaaactatggcaaattatttcagaactttaataaaattcacaccaacaatttaatg |
34547733 |
T |
|
| Q |
117 |
-gcacgcatgattagaacatcatcattatgatcatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaaactccaattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
34547734 |
agcacgcatgattagaacatcatcattatgatcatccattaacttccaagtaccatcagattgttgaaccatacccttattctcaactaccctccaattc |
34547833 |
T |
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| Q |
216 |
tcaggaatgtgatattcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttccttccttgtg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34547834 |
tcaggaatgtgatattcatcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtg |
34547933 |
T |
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| Q |
316 |
ttcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34547934 |
ttcctgcaattccatgcaagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttc |
34548006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 4674487 - 4674568
Alignment:
| Q |
264 |
agtgcaatgtcacgattcacctctaaattgaaccctcctttccttccttgtgttcctgcaattccatgcaagtaaacctcca |
345 |
Q |
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|||||||| |||||||| ||||| | |||||| ||| ||| || |||||||||||||| | ||||||||| ||| |||||| |
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| T |
4674487 |
agtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca |
4674568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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