View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1513_low_11 (Length: 267)
Name: NF1513_low_11
Description: NF1513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1513_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 48526637 - 48526862
Alignment:
| Q |
1 |
aaaagctgccaggaaattgattaaatatcaattagttttcctaatcccatgtaattaaaatgagaaattgctattttcatgnnnnnnntatctcctatgc |
100 |
Q |
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| T |
48526637 |
aaaagctgccaggaaattgatgaaaaaacaattagttttcataatcccatgtaattaaaat-actattggctattttcatgaaaaaaatatctcctatgc |
48526735 |
T |
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| Q |
101 |
atgtaacaaatacttcagctggatttaaatataagcaaaggactacata---------ccaattttgctttgttgaggagacgacgagcatatttacgat |
191 |
Q |
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| T |
48526736 |
atgtaacaaatacttcagctggatttaaatataagcaaaggactacatatattcaataccaattttgctttgttgaggagacgacgagcatatttacgat |
48526835 |
T |
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| Q |
192 |
cagtatgtctaaaaacaatggaagaag |
218 |
Q |
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| T |
48526836 |
cagtatgtctaaaaacaatggaagaag |
48526862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 7222175 - 7222247
Alignment:
| Q |
146 |
cataccaattttgctttgttgaggagacgacgagcatatttacgatcagtatgtctaaaaacaatggaagaag |
218 |
Q |
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| T |
7222175 |
cataccaattttgctttattgaggagacggcgagaatatttgggatcaacatgcctaaaaacaatggaagaag |
7222247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 50305553 - 50305487
Alignment:
| Q |
153 |
attttgctttgttgaggagacgacgagcatatttacgatcagtatgtctaaaaacaatggaagaagt |
219 |
Q |
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| T |
50305553 |
attttgctttattaaggagatgacgagcatatttacgatcaacatgtctaaaaacaatggaagaagt |
50305487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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