View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1513_low_17 (Length: 211)
Name: NF1513_low_17
Description: NF1513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1513_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 1172317 - 1172479
Alignment:
| Q |
18 |
aatccacctccctttcttatagtaagagatagttcatgtttgtgatcattctgactttccacgaacccatcgttttggttcaaagcctgagcacttgaga |
117 |
Q |
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| T |
1172317 |
aatccacctccctttcttatagtaagagatagttcatgtttgtgatcattccgactttccacgaacccatcgttttggttcaaagcttgagcacttgaga |
1172416 |
T |
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| Q |
118 |
tcatcaataggaagagtacagaaagtattatcttcatgctaggcctaagggattctttgcaaa |
180 |
Q |
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| T |
1172417 |
tcatcaataggaagagtacagaaagtattatcttcatgctaggcctaagggattctttgcaaa |
1172479 |
T |
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Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 1164965 - 1165104
Alignment:
| Q |
24 |
cctccctttcttatagtaagagatagttcatgtttgtgatcattctgactttccacgaacccatcgttttggttcaaagcctgagcacttgagatcatca |
123 |
Q |
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| T |
1164965 |
cctccctttcttatagtatgggatagttcatgtttgtgatcattccgactttccgcgaacccatcatggtggttcaaagcttgagcacttgagatcatca |
1165064 |
T |
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| Q |
124 |
ataggaagagtacagaaagtattatcttcatgctaggcct |
163 |
Q |
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| T |
1165065 |
atatgaacagtacagaaagtattaccttcatggtaggcct |
1165104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 1160311 - 1160387
Alignment:
| Q |
24 |
cctccctttcttatagtaagagatagttcatgtttgtgatcattctgactttccacgaacccatcgttttggttcaa |
100 |
Q |
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| T |
1160311 |
cctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggttcaa |
1160387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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