View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1513_low_2 (Length: 549)

Name: NF1513_low_2
Description: NF1513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1513_low_2
NF1513_low_2
[»] chr2 (1 HSPs)
chr2 (7-533)||(33637303-33637826)
[»] chr4 (4 HSPs)
chr4 (353-533)||(13784358-13784538)
chr4 (121-242)||(13784126-13784247)
chr4 (378-422)||(10553569-10553613)
chr4 (378-422)||(10571299-10571343)
[»] scaffold0267 (2 HSPs)
scaffold0267 (350-477)||(13338-13465)
scaffold0267 (22-191)||(13615-13785)
[»] scaffold0128 (2 HSPs)
scaffold0128 (353-511)||(34021-34179)
scaffold0128 (116-242)||(33781-33907)
[»] chr7 (3 HSPs)
chr7 (354-531)||(20475969-20476146)
chr7 (34-176)||(20475663-20475806)
chr7 (379-431)||(15571919-15571971)
[»] chr3 (2 HSPs)
chr3 (354-449)||(3837885-3837980)
chr3 (22-191)||(3838134-3838304)
[»] chr8 (5 HSPs)
chr8 (360-478)||(40794177-40794295)
chr8 (357-478)||(29124849-29124973)
chr8 (113-241)||(29125102-29125230)
chr8 (374-425)||(29126468-29126519)
chr8 (16-182)||(29126661-29126827)


Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 7 - 533
Target Start/End: Original strand, 33637303 - 33637826
Alignment:
Q  7 tccaagaatataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaac 106  Q
    ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637303 tccaacaaaatagttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaac 33637402  T
Q  107 agttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatat 206  Q
    | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637403 aattgttgcatagaagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatat 33637502  T
Q  207 gttcagctttatcatctctcctattatacataataatatcatcaaaagctcctttgctagccatcaacatgacatttccattttcagagagacaaaccgg 306  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33637503 gttcagctctatcatctctcctattatacatactaatatcatcaaaagctcctttgctagccagcaacatgacatttccattttcagagagacaaaccgg 33637602  T
Q  307 aaacaaccaatcaactaaattgagattcatagaaatacccaattgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctc 406  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637603 aaacaaccaatcaactaaattgagattcacacaaatacccaattgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctc 33637702  T
Q  407 atttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaa 506  Q
    ||||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   | ||||||    
T  33637703 atttctcacaaaacaagatgggttctcatgtggacataataaaggcacagacgatccctcaaaacaacaagagttggttcatctttggg---tacaacaa 33637799  T
Q  507 aaccatcaggtaacatcatatacttac 533  Q
    |||||||||||||||||||||||||||    
T  33637800 aaccatcaggtaacatcatatacttac 33637826  T

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Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 353 - 533
Target Start/End: Original strand, 13784358 - 13784538
Alignment:
Q  353 acatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggc 452  Q
    ||||| || ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||  |||||||| ||  ||||||||||||    
T  13784358 acataactgacattcaccaaccgagtccaagattcttgaactccatactctctcatttcccacaaaacaaaatgtgttctcatttgatcataataaaggc 13784457  T
Q  453 acaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttac 533  Q
    | |  ||| ||||||||||| |||||| ||||||||||| |||||| ||| ||||||||||||| | ||  ||||||||||    
T  13784458 agaggcgacccctcaaaacagcaagagctggttcatcttggggcacctcaccaaaaccatcaggcagcaaaatatacttac 13784538  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 13784126 - 13784247
Alignment:
Q  121 agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatca 220  Q
    ||||||||||||| ||| ||| |||||||||||||| | |||||||||||| ||   |||||||| ||||| | ||| || || |  |||| || |||||    
T  13784126 agcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattgaagaaattcaactatatca 13784225  T
Q  221 tctctcctattatacataataa 242  Q
    ||||||| ||||||||||||||    
T  13784226 tctctccgattatacataataa 13784247  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 10553569 - 10553613
Alignment:
Q  378 tccaagactcttgaactccaaactctctcatttcccacaaaacaa 422  Q
    |||||||||||||||||||||| ||| |||||| ||| |||||||    
T  10553569 tccaagactcttgaactccaaaatctgtcattttccataaaacaa 10553613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 10571299 - 10571343
Alignment:
Q  378 tccaagactcttgaactccaaactctctcatttcccacaaaacaa 422  Q
    |||||||||||||||||||||| ||| |||||| ||| |||||||    
T  10571299 tccaagactcttgaactccaaaatctgtcattttccataaaacaa 10571343  T

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Target: scaffold0267 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 350 - 477
Target Start/End: Complemental strand, 13465 - 13338
Alignment:
Q  350 tgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaa 449  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  13465 tgaacatagctaacattcaccaactgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggttctcatgtggttataataaa 13366  T
Q  450 ggcacaaacgatccctcaaaacaacaag 477  Q
      ||||| | | ||||||||||| ||||    
T  13365 aacacaagcaacccctcaaaacagcaag 13338  T

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Target: scaffold0267; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 13785 - 13615
Alignment:
Q  22 aaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcataga 120  Q
    ||||||||||  ||||||| |||||| ||||||| |||||  ||||  | |  ||||| |||||||||||||||| ||| ||||||| ||||||||||      
T  13785 aaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaaacaaacatttgttgcatacg 13686  T
Q  121 agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt 191  Q
    || |||||||||| |||||   |||||||||||||||| |||||||||||||||||| | |||||||||||    
T  13685 agattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacgaatttggttgt 13615  T

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Target: scaffold0128 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 353 - 511
Target Start/End: Original strand, 34021 - 34179
Alignment:
Q  353 acatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggc 452  Q
    ||||| || ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||  |||||||| ||  ||||||||||||    
T  34021 acataactgacattcaccaaccgagtccaagattcttgaactccatactctctcatttcccacaaaacaaaatgtgttctcatatgatcataataaaggc 34120  T
Q  453 acaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaacca 511  Q
    | |  ||| ||||||||||| |||||| ||||||||||| |||||  ||| ||||||||    
T  34121 agaggcgacccctcaaaacagcaagagctggttcatcttcgggcagctcaccaaaacca 34179  T

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Target: scaffold0128; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 33781 - 33907
Alignment:
Q  116 atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt 215  Q
    |||| ||||||||||||| ||||| | ||||||||||||||   |||||||||||| ||   |||||||||||||| | |||||  || |  || | ||     
T  33781 ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta 33880  T
Q  216 tatcatctctcctattatacataataa 242  Q
    |||||||||||| ||||||||||||||    
T  33881 tatcatctctccgattatacataataa 33907  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 354 - 531
Target Start/End: Original strand, 20475969 - 20476146
Alignment:
Q  354 catagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggca 453  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |   ||||||||| |||    
T  20475969 catagctaacattcaccaaccgagtccaagactcttgaaccccaaactctctcatttcccacaaaacaaaatgggttctcatataatcataataaaagca 20476068  T
Q  454 caaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatactt 531  Q
     |  |   |||||||||||  |||  |||||||||||| ||| | ||||  |||||||||||| |||| | |||||||    
T  20476069 taggcagcccctcaaaacagtaagccttggttcatcttcgggaagttcactaaaaccatcaggcaacaacgtatactt 20476146  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 20475663 - 20475806
Alignment:
Q  34 gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtgg 132  Q
    ||||||||||||||| |||||| ||| || | ||  | |||| ||  | |||| ||||||||| ||| | ||| ||||||||||| | |||||||| |||    
T  20475663 gaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttgttgcattgcagcttaatttgg 20475762  T
Q  133 aagaggatggggcaaaaccaagctcttcatatgttcatcagcat 176  Q
    |  |||| | |||||||||||||||| |||||| |||| |||||    
T  20475763 acaaggacgaggcaaaaccaagctctgcatatgctcatgagcat 20475806  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 15571919 - 15571971
Alignment:
Q  379 ccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttc 431  Q
    ||||||||||| |||||||||||| ||||||| |||||  ||||||| |||||    
T  15571919 ccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttc 15571971  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 3837980 - 3837885
Alignment:
Q  354 catagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaa 449  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  3837980 catagctaacattcaccaactgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggttctcatgtggttataataaa 3837885  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 3838304 - 3838134
Alignment:
Q  22 aaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcataga 120  Q
    ||||||||||  ||||||| |||||| ||||||| |||||  ||||  | |  ||||  |||||||||||||||| ||| ||||||||||||||||||      
T  3838304 aaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaaacaaacagttgttgcatacg 3838205  T
Q  121 agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt 191  Q
    || |||||||||| |||||   |||||||||||||||| ||||||||| |||||||| | |||||||||||    
T  3838204 agattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacgaatttggttgt 3838134  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 478
Target Start/End: Original strand, 40794177 - 40794295
Alignment:
Q  360 taacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacg 459  Q
    |||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||   ||||||||||||| |  ||    
T  40794177 taacatccatcaaccgagtccaagattcttgaactccaaactctctcatttcccacaaaacaaaatgtgttctcatgtaatcataataaaggcaaaggcg 40794276  T
Q  460 atccctcaaaacaacaaga 478  Q
    | ||||||||||| |||||    
T  40794277 acccctcaaaacagcaaga 40794295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 357 - 478
Target Start/End: Complemental strand, 29124973 - 29124849
Alignment:
Q  357 agctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaataggttctcatgtggac---ataataaaggca 453  Q
    |||||| |||||||||  | ||||||||||||||||||||||||||||||||| ||||||||   |||| ||||||||| ||| |   ||||||||||||    
T  29124973 agctaatattcaccaagtgggtccaagactcttgaactccaaactctctcattccccacaaagtgaaatgggttctcatctggtcataataataaaggca 29124874  T
Q  454 caaacgatccctcaaaacaacaaga 478  Q
    ||| ||| ||||||||||| |||||    
T  29124873 caatcgacccctcaaaacagcaaga 29124849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
Q  113 tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag 212  Q
    ||||||||||||||||| ||| ||||| | ||||||||||| |||| ||||||||||| |||||||  |||||||| ||  ||||||  ||||||   |     
T  29125230 tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa 29125131  T
Q  213 ctttatcatctctcctattatacataata 241  Q
    || |||||||||||||| |||||||||||    
T  29125130 ctctatcatctctcctactatacataata 29125102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 29126519 - 29126468
Alignment:
Q  374 cgagtccaagactcttgaactccaaactctctcatttcccacaaaacaaaat 425  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||| |||||    
T  29126519 cgagtccaagactcttaaactccaaactctctcatttcacccaaaataaaat 29126468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 29126827 - 29126661
Alignment:
Q  16 ataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaata-caaacagttgttg 114  Q
    ||||| ||||||| ||  ||||||||||||||||||   | |||||| ||||||| |||||||| || |||  || ||| |||| | ||||  |||||||    
T  29126827 ataatcaaactatttaaggaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaatgtatattaaaaaaatcaaattgttgttg 29126728  T
Q  115 catagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa 182  Q
    |||||||| |||||| ||||   |||| ||||||| |||||| | |||||||||| |  |||||||||    
T  29126727 catagaagtttaatg-ggaatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa 29126661  T

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