View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1513_low_3 (Length: 424)
Name: NF1513_low_3
Description: NF1513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1513_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 86 - 417
Target Start/End: Original strand, 1656879 - 1657210
Alignment:
| Q |
86 |
acaagcaatgcaacgcactccacaatcaatagcttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaag |
185 |
Q |
| |
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| T |
1656879 |
acaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgcgcacataacatgatgagcatatatacaattacgttcagaaag |
1656978 |
T |
|
| Q |
186 |
aaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgata |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1656979 |
aaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgata |
1657078 |
T |
|
| Q |
286 |
agagtctccactctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtg |
385 |
Q |
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|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1657079 |
agagtctccgctctttgagattaaaaacgatatcgagctgcgaggcaacgacttattagcacctcatcacagtacttcaaatcgacctctctcagttgtg |
1657178 |
T |
|
| Q |
386 |
tgcatttttcaaccacatgcgtcactcctttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
1657179 |
tgcatttttcaaccacatgcgtcactcctttg |
1657210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 644374 - 644789
Alignment:
| Q |
1 |
atgcaaaacccatgctaccaaagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacg |
100 |
Q |
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|
|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
644374 |
atgcaaaacccatgctaccaaagagaacttaaataagtaggaaacaagaatttgttcaagtaatataagtcatggcaaagcgacaacaagcaatgcaatg |
644473 |
T |
|
| Q |
101 |
cactccacaatcaatagctt------------aataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaa |
188 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||||| | |
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|
| T |
644474 |
cactccacaatcaatagcttgcattatatattaataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttaaaaaagaga |
644573 |
T |
|
| Q |
189 |
acaaaagtaatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataaga |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
644574 |
acaaaagtaatttctcatagaagtaaatctgaaaaccaaaaacattagaaattcacaattcaaacttcatagcaaacaagacatccttgccgtgataaga |
644673 |
T |
|
| Q |
289 |
gtctccactctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgc |
388 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| ||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
644674 |
gtctccgctctttgagatt-aaaacgataccgagttgctaggcaacgactt-----------atcacagtacttcaaatcgatctctctcagttgtgtgc |
644761 |
T |
|
| Q |
389 |
atttttcaaccacatgcgtcactccttt |
416 |
Q |
| |
|
|||||||||||||||| |||||||||| |
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|
| T |
644762 |
atttttcaaccacatgtttcactccttt |
644789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 12121660 - 12121601
Alignment:
| Q |
354 |
acaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcc |
413 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||| ||||||||| ||||||| |
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|
| T |
12121660 |
acaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgcttcactcc |
12121601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 1513607 - 1513548
Alignment:
| Q |
354 |
acaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcc |
413 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||||||||| | |||| || ||||||| |
|
|
| T |
1513607 |
acaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcc |
1513548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 553384 - 553437
Alignment:
| Q |
363 |
caaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactccttt |
416 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
553384 |
caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactccttt |
553437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 546594 - 546622
Alignment:
| Q |
198 |
atttctcatagaagtaaatctgaaaacaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
546594 |
atttctcatagaagtaaatctgaaaacaa |
546622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 31333586 - 31333325
Alignment:
| Q |
1 |
atgcaaaacccatgctaccaaagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
31333586 |
atgcaaaacccatgctaccaaagagaacttcaataagtaggacataagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatg |
31333487 |
T |
|
| Q |
101 |
cactccacaatcaatagcttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31333486 |
cactccacaatcaatagcttaataacttattcatttgtcatgctcacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatt |
31333387 |
T |
|
| Q |
201 |
tctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31333386 |
tctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagca |
31333325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 31340316 - 31340055
Alignment:
| Q |
1 |
atgcaaaacccatgctaccaaagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
31340316 |
atgcaaaacccatgctaccaaagagaacttcaataagtaggacataagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatg |
31340217 |
T |
|
| Q |
101 |
cactccacaatcaatagcttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31340216 |
cactccacaatcaatagcttaataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatt |
31340117 |
T |
|
| Q |
201 |
tctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagca |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31340116 |
tctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagca |
31340055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 196 - 417
Target Start/End: Complemental strand, 28246654 - 28246433
Alignment:
| Q |
196 |
taatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctcca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
28246654 |
taatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagcaaacaagacatccttgatgtgataagagtctccg |
28246555 |
T |
|
| Q |
296 |
ctctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28246554 |
ctctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcaccttatcacagtacttcaaattgacctctctcagttgtgtgcatttttc |
28246455 |
T |
|
| Q |
396 |
aaccacatgcgtcactcctttg |
417 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
28246454 |
aaccacatgcgtcactcatttg |
28246433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 233 - 417
Target Start/End: Complemental strand, 11936599 - 11936415
Alignment:
| Q |
233 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccactctttgagattaaaaacgataccgagctgcgaggca |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11936599 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccgctctttgagattaaaaacgataccgagctgcgaggca |
11936500 |
T |
|
| Q |
333 |
acgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttg |
417 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11936499 |
acgacttattagcaccttatcacagtacttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttg |
11936415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 233 - 417
Target Start/End: Complemental strand, 11948579 - 11948395
Alignment:
| Q |
233 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccactctttgagattaaaaacgataccgagctgcgaggca |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11948579 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccgctctttgagattaaaaacgataccgagctgcgaggca |
11948480 |
T |
|
| Q |
333 |
acgacttattagcacctcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttg |
417 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11948479 |
acgacttattagcaccttatcacagtacttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttg |
11948395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 28934954 - 28935007
Alignment:
| Q |
363 |
caaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactccttt |
416 |
Q |
| |
|
||||| || |||||| ||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
28934954 |
caaatagatctctcttagttgtgtgcaattttctaccacatgcttcactccttt |
28935007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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