View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1513_low_9 (Length: 280)
Name: NF1513_low_9
Description: NF1513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1513_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 39839171 - 39839418
Alignment:
| Q |
17 |
accttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaatt |
116 |
Q |
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| T |
39839171 |
accttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaatt |
39839270 |
T |
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| Q |
117 |
caacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgct |
216 |
Q |
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| T |
39839271 |
caacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgct |
39839370 |
T |
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| Q |
217 |
accggcgaaaatgctgagtgtgttactcctgaaattgaaggactttct |
264 |
Q |
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| T |
39839371 |
accggcgaaaatgctgagtgtgttactcctgaaattgaaggactttct |
39839418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 39733741 - 39733540
Alignment:
| Q |
63 |
attcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattg |
162 |
Q |
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| T |
39733741 |
attcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattg |
39733642 |
T |
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| Q |
163 |
tggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggacttt |
262 |
Q |
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| T |
39733641 |
tggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggacttt |
39733542 |
T |
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| Q |
263 |
ct |
264 |
Q |
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| T |
39733541 |
ct |
39733540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 31290718 - 31290616
Alignment:
| Q |
17 |
accttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaatt |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||| |||| ||||| |
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| T |
31290718 |
accttccaatgcctgaagatttccatgaatacccttcaaagaaacagttcataaactaccttgaaaactatccgaacaaatttgaaatcgacccacaatt |
31290619 |
T |
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| Q |
117 |
caa |
119 |
Q |
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||| |
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| T |
31290618 |
caa |
31290616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 31290084 - 31290181
Alignment:
| Q |
17 |
accttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaa |
114 |
Q |
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| T |
31290084 |
accttccaatgcttgaagatttccctgaatacccttcaaagaaacagttcataaactatcttgtaaactatgctaacaaatttgaaatctccccgcaa |
31290181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 31290472 - 31290504
Alignment:
| Q |
185 |
ttgagtatatttgtaggtggcttgttgttgcta |
217 |
Q |
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| T |
31290472 |
ttgagaatatttgtaggtggcttgttgttgcta |
31290504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 29857836 - 29857624
Alignment:
| Q |
40 |
cctgaatacccttcaaagaaacaattcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgcta |
139 |
Q |
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|||||||| || |||||||||| ||||||| ||| |||||| ||| || || | |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29857836 |
cctgaatatccaacaaagaaacagttcataaactatcttgaatcctacgcgaaacactttgaaatcaacccgcgattcaacgagtgtgttcaatctgcta |
29857737 |
T |
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| Q |
140 |
agtatgatgaaaccagtggattgtggagggtcaagac------------aaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
227 |
Q |
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| T |
29857736 |
aatatgatgagactaatgggttgtggagagttgagactgtttccaatggaaatgaagttgagtatatttgtaggtcgcttgtggttgctactggtgagaa |
29857637 |
T |
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| Q |
228 |
tgctgagtgtgtt |
240 |
Q |
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| T |
29857636 |
tgcagagtgtgtt |
29857624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 17407974 - 17408021
Alignment:
| Q |
180 |
tgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
227 |
Q |
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| T |
17407974 |
tgaagttgagtatatttgtaggtggcttgtggttgctaccggtgaaaa |
17408021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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