View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15140_high_2 (Length: 444)
Name: NF15140_high_2
Description: NF15140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15140_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 4 - 428
Target Start/End: Original strand, 34077010 - 34077429
Alignment:
| Q |
4 |
caaaggtgctatgagcttaattgactagcatgcatgacatgacaattgacaacaatcacgagaaattctactatagattatcatttgcggttcttgaact |
103 |
Q |
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| T |
34077010 |
caaaggtgctatgagcttaattgactagcatgcatg-----acaattgacaaccatcaagagaaattctactatagattatcatttgcggttcttgaaat |
34077104 |
T |
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| Q |
104 |
tgcaagaaaataattaattatagatgattttttattcaacttgtttatagaacattgatattgcccttagatcaatcatacatatgacttgccaaacgtg |
203 |
Q |
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| T |
34077105 |
tgcaagaaaataattaattatagatgattttttattcaacttgtttatagaacattgatattgcccttaaatcaatcatacatatgacttgccaaacgtg |
34077204 |
T |
|
| Q |
204 |
gtttagcaacagcaatcaaaggatgaaccttaggcatagtcattccataaacttcttgagtatcaatatcttgatgattcaaacccttaggtgggttcca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34077205 |
gtttagcaacagcaatcaaaggatgaaccttaggcatagtcattccataaacttcttgagtatcaatatcttgatgattcaaacccttaggtgggttcca |
34077304 |
T |
|
| Q |
304 |
atcaaaacaatgaaacagtcgagccaaagccattaaaaccaaagtgactccaagtggtgcacccggacatctgcgttttccagcactaaaaggcagtatc |
403 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34077305 |
atcaaaacaatgaaacaatcgagccaaagccattaaaaccaaagtgactccaagtggtgcacccggacacttgcgttttccagcactaaaaggcagtatc |
34077404 |
T |
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| Q |
404 |
ttaaaatcagctccatggctgatct |
428 |
Q |
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||||||||||||||||||||||||| |
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| T |
34077405 |
ttaaaatcagctccatggctgatct |
34077429 |
T |
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