View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15140_high_5 (Length: 275)
Name: NF15140_high_5
Description: NF15140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15140_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 5936303 - 5936048
Alignment:
| Q |
2 |
ggtccattgctagtaaaactagagcttggttgtgatctttactactaattcttagactctaaccaaactaagacataatcaacaacaaaatcaatttcat |
101 |
Q |
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| T |
5936303 |
ggtccattgctagtaaaactagagcttggttgtgatctttactactaattcttagactctaaccaaactaagacataatcaacaacaaaatcaatttcat |
5936204 |
T |
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| Q |
102 |
ccctactgatttttccatcacgattggtatcaacttttctaagacaacaagaagctctccaacaaggcatcctcgaaccaaattccttgaaagctttctt |
201 |
Q |
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| T |
5936203 |
ccctactgatttttccatcacgattggtatcaacttttctaagacaacaagaagctctccaacaaggcatcctcgaaccaaattccttgaaagctttctt |
5936104 |
T |
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| Q |
202 |
aagctcatctttgctcaaacaaccatctccatctcgatctgctttcatcaatatac |
257 |
Q |
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| T |
5936103 |
aagctcatctttgctcaaacaaccatctccatctcgatctgctttcatcaatatac |
5936048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 5934574 - 5934353
Alignment:
| Q |
35 |
gatctttactactaattcttagactctaaccaaactaagacataatcaacaacaaaatcaatttcatccctactgatttttccatcacgattggtatcaa |
134 |
Q |
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|||| ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||| ||||| |||| |
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| T |
5934574 |
gatcattactactaattcttggactctaaccatgctaagacataatcaacaacagaatcaatctcttccctgctgatttttccatcacggttggtgtcaa |
5934475 |
T |
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| Q |
135 |
cttttctaagacaacaagaagctctccaacaaggcatcctcgaaccaaattccttgaaagctttcttaagctcatctttgctcaaacaaccatctccatc |
234 |
Q |
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|||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||| |
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| T |
5934474 |
tttttctaagacaacaaaaggctctccaacaagtattcctcgaaccaaattccttgaaagctttctcaagctcacctttgctcaagctaccatctccatt |
5934375 |
T |
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| Q |
235 |
tcgatctgctttcatcaatata |
256 |
Q |
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| T |
5934374 |
tcgacctgctttcatcaatata |
5934353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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