View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15140_low_1 (Length: 524)
Name: NF15140_low_1
Description: NF15140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15140_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 179 - 507
Target Start/End: Original strand, 5824195 - 5824523
Alignment:
| Q |
179 |
tctcatgaacattaacaatggccatggccccaacccccaacctaaaatacaactaaaatttgtccacatctgcaaaccactacatcaatatgattttcaa |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
5824195 |
tctcatgaacattaacaatggccatggccccaacccccaacctaaaagacaactaaaatttgtccacatatgcaagccactacatcaatatgattttcaa |
5824294 |
T |
|
| Q |
279 |
acaacaagcaaacaaaacccataactagaatccactgagaaacaaccataccagcccctaccacaaccttccactacatctgcacttcgtccgacacaag |
378 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5824295 |
acaacaaccaaacaaaacccataactagaatccactgagaaacatccataccagcccctaccacaaccttccactacatctgcacttcgtccgacacaag |
5824394 |
T |
|
| Q |
379 |
ccgatacaaaaccaaccaactttcgaattccaacccaaaacctccccacaagagccctaaaaaccaaacaaaagctacaccaccatacaccaacacccct |
478 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5824395 |
ccaatacaaaaccaaccaactttcgaattccaacccaaaacctccccacaacagccctaaaaaccaaacaaaagccacaccaccatacaccaacacccct |
5824494 |
T |
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| Q |
479 |
gccattgccaaaattattgttattgttaa |
507 |
Q |
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| T |
5824495 |
gccattgccaaaattattgttattgttaa |
5824523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 5824016 - 5824106
Alignment:
| Q |
1 |
aacaagatttacaaagcaatggtgtcgtatatagacggaacactcaaaaagagtgatacagacaaagcaaagttcgtgtaaaaaacctcgc |
91 |
Q |
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| T |
5824016 |
aacaagatttacaaagcaatggtgtcgtatataggtggaacacctaaaaagagagatacagacaaagcaaagttcatgtaaaaaacctcgc |
5824106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 220 - 487
Target Start/End: Original strand, 29176983 - 29177245
Alignment:
| Q |
220 |
ctaaaatacaactaaaatttgtccacatctgcaaaccactacatcaatatgattttcaaacaacaagcaaacaaaacccataactagaatccactgagaa |
319 |
Q |
| |
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|||||| || |||||||| |||||||| | |||| |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||| |||| | |
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| T |
29176983 |
ctaaaagaccactaaaatatgtccacacccgcaagccactacatccatatgatctccaaacaacaatcaaacaaaacccataactagaatccattgagca |
29177082 |
T |
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| Q |
320 |
acaaccataccagcccctaccacaaccttccactacatctgcacttcgtccgacacaagccgatacaaaaccaaccaactttcgaattccaacccaaaac |
419 |
Q |
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| T |
29177083 |
acaacaatatcagcccctaccacaaccttccaccacatctgcacctcatccgacacaagccaataaaa----aaccaactttcaaattccaacacgagac |
29177178 |
T |
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| Q |
420 |
ctccccacaagagccctaaaaaccaaacaaaagctacaccaccatacaccaacacccctgccattgcc |
487 |
Q |
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| T |
29177179 |
ctccccacaacagccc-caaaaccaaacaaaagcgtcagtgccatacgccaacacccctgccattgcc |
29177245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29176785 - 29176871
Alignment:
| Q |
1 |
aacaagatttacaaagcaatggtgtcgtatatagacggaacactcaaaaagagtgatacagacaaagcaaagttcgtgtaaaaaacc |
87 |
Q |
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||||||| ||||||||||| ||| ||||||||| |||||||| |||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
29176785 |
aacaagagttacaaagcaacagtgccgtatataggcggaacacccaaaaaaagtgatacgaacaaagcaaagttcgtgtacaaaacc |
29176871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 202 - 430
Target Start/End: Complemental strand, 41789316 - 41789092
Alignment:
| Q |
202 |
atggccccaacccccaacctaaaatacaactaaaatttgtccacatctgcaaaccactacatcaatatgattttcaaacaacaagcaaacaaaacccata |
301 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||| |||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41789316 |
atggctccaacccccaacctaaaagaccactaaaatatgtccacatccacaagccgctacatcaatatgatttccaaacaacaagcaaacaaaacccata |
41789217 |
T |
|
| Q |
302 |
actagaatccactgagaaacaaccataccagcccctaccacaaccttccactacatctgcacttcgtccgacacaagccgatacaaaaccaaccaacttt |
401 |
Q |
| |
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||||| ||| | |||| |||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| || | |||||| || ||||||| |
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| T |
41789216 |
actaggatcaattgagcaacaaccatatcagcccctgccacaaccttccaccacatccgcacttcgtccgacataaatcaatacaa----aatcaacttt |
41789121 |
T |
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| Q |
402 |
cgaattccaacccaaaacctccccacaag |
430 |
Q |
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| T |
41789120 |
caaattccaacacaagacctccccacaag |
41789092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 202 - 387
Target Start/End: Complemental strand, 32737601 - 32737415
Alignment:
| Q |
202 |
atggccccaacccccaacctaaaatacaactaaaatttgtccacatctgcaaaccactacatcaatatgattttcaaa-caacaagcaaacaaaacccat |
300 |
Q |
| |
|
|||||| || |||||||||||||| || | ||||||||||||| ||| |||| | | |||||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
32737601 |
atggcctcatcccccaacctaaaagaccaataaaatttgtccatatccgcaagcgagtacatcaatatgatttccaaaacaacaagcaaacaaatcccat |
32737502 |
T |
|
| Q |
301 |
aactagaatccactgagaaacaaccataccagcccctaccacaaccttccactacatctgcacttcgtccgacacaagccgatacaa |
387 |
Q |
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||| |||||||| |||| |||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||| |
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| T |
32737501 |
aacgagaatccattgagcaacaaccatatcagcccctaccacaatcttccaccacatccgcacttcgtccgacacaagccaatacaa |
32737415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 418 - 491
Target Start/End: Complemental strand, 32737413 - 32737340
Alignment:
| Q |
418 |
acctccccacaagagccctaaaaaccaaacaaaagctacaccaccatacaccaacacccctgccattgccaaaa |
491 |
Q |
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||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |
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| T |
32737413 |
acctccccacagtagccctaaaaaccaaacaaaaaccacaacaccatacaccaacacccctgccattgccaaaa |
32737340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 255 - 492
Target Start/End: Original strand, 24374918 - 24375144
Alignment:
| Q |
255 |
ccactacatcaatatgattttcaaacaacaagcaaacaaaacccataactagaatccactgagaaacaaccataccagcccctaccacaaccttccacta |
354 |
Q |
| |
|
|||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| |||||| ||| || |||||||||||||||||||| | |
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| T |
24374918 |
ccactacatcaatatgatctccaaacaacatgcaaacaaaacccataactagaatccattgagcaacaacaatatcaccccctaccacaaccttccacca |
24375017 |
T |
|
| Q |
355 |
catctgcacttcgtccgacacaagccgatacaaaaccaaccaactttcgaattccaacccaaaacctccccacaagagccctaaaaaccaaacaaaagct |
454 |
Q |
| |
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||| |||| ||| |||||||||| | |||||| || |||||||| |||| |||||| ||||||||| ||||| |||||||||||||||| |
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| T |
24375018 |
tatccgcacctcgcccgacacaagtcaatacaa----aatcaactttcaaatt------caaaacttccccacaacagccc-caaaaccaaacaaaagcc |
24375106 |
T |
|
| Q |
455 |
acaccaccatacaccaacacccctgccattgccaaaat |
492 |
Q |
| |
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|| || ||||||||||||||| ||||||| ||||||| |
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|
| T |
24375107 |
tcaacatcatacaccaacacccttgccatttccaaaat |
24375144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 24374686 - 24374735
Alignment:
| Q |
22 |
gtgtcgtatatagacggaacactcaaaaagagtgatacagacaaagcaaa |
71 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||| | |||||||||||| |
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| T |
24374686 |
gtgtcgtatatagacggaacacccaaaaaaagtgacatagacaaagcaaa |
24374735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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