View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15140_low_8 (Length: 212)

Name: NF15140_low_8
Description: NF15140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15140_low_8
NF15140_low_8
[»] chr6 (11 HSPs)
chr6 (11-196)||(12900399-12900584)
chr6 (94-158)||(12949579-12949643)
chr6 (94-158)||(12908150-12908215)
chr6 (94-158)||(12933239-12933304)
chr6 (94-142)||(12959038-12959086)
chr6 (43-90)||(18555966-18556013)
chr6 (45-90)||(12958962-12959007)
chr6 (43-90)||(12949501-12949548)
chr6 (98-142)||(18556048-18556092)
chr6 (43-90)||(12908072-12908119)
chr6 (165-198)||(12949668-12949701)
[»] chr2 (3 HSPs)
chr2 (98-158)||(17922579-17922639)
chr2 (43-81)||(17922686-17922724)
chr2 (165-198)||(17922521-17922554)
[»] chr5 (1 HSPs)
chr5 (43-89)||(10716248-10716294)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 12900399 - 12900584
Alignment:
Q  11 gtgagatgaactgatattcttatatgtttatagcttatggaattagaattttatttttatcatcttgttgtgcatttcaattaaatgaccttcttgattt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12900399 gtgagatgaactgatattcttatatgtttatagcttatggaattagaattttatttttatcatcttgttgtgcatttcaattaaatgaccttcttgattt 12900498  T
Q  111 taatttcaggtcttgaacaaaatttctaagtcgtttgtgcaaagagaaaatggttaagaaaatgaatggtccgctggaatcacatg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12900499 taatttcaggtcttgaacaaaatttctaagtcgtttgtgcaaagagaaaatggttaagaaaatgaatggtccgctggaatcacatg 12900584  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 12949579 - 12949643
Alignment:
Q  94 aatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcgtttgtgcaaagagaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  12949579 aatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaa 12949643  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 12908150 - 12908215
Alignment:
Q  94 aatgaccttcttgattttaatttcagg-tcttgaacaaaatttctaagtcgtttgtgcaaagagaa 158  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  12908150 aatgaccttcttgattttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaa 12908215  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 12933239 - 12933304
Alignment:
Q  94 aatgaccttcttgattttaatttcagg-tcttgaacaaaatttctaagtcgtttgtgcaaagagaa 158  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  12933239 aatgaccttcttgattttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaa 12933304  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 12959038 - 12959086
Alignment:
Q  94 aatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtc 142  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12959038 aatgaccttcttgattttaatttcaggttttgaacaaaatttctaagtc 12959086  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 18555966 - 18556013
Alignment:
Q  43 gcttatggaattagaattttatttttatcatcttgttgtgcatttcaa 90  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  18555966 gcttatggaattagaattttatttttatcatcttattgtgcatttcaa 18556013  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 12958962 - 12959007
Alignment:
Q  45 ttatggaattagaattttatttttatcatcttgttgtgcatttcaa 90  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  12958962 ttatggaattagaattttatttttatcatcttattgtgcatttcaa 12959007  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 12949501 - 12949548
Alignment:
Q  43 gcttatggaattagaattttatttttatcatcttgttgtgcatttcaa 90  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||    
T  12949501 gcttatgaaattagaattttatttttatcatcttattgtgcatttcaa 12949548  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 18556048 - 18556092
Alignment:
Q  98 accttcttgattttaatttcaggtcttgaacaaaatttctaagtc 142  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  18556048 accttcttgattttaatttcaggttttgaacaatatttctaagtc 18556092  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 12908072 - 12908119
Alignment:
Q  43 gcttatggaattagaattttatttttatcatcttgttgtgcatttcaa 90  Q
    ||||||||||||||| |||||||||||||||||| || || |||||||    
T  12908072 gcttatggaattagagttttatttttatcatcttattttgtatttcaa 12908119  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 12949668 - 12949701
Alignment:
Q  165 taagaaaatgaatggtccgctggaatcacatgtg 198  Q
    ||||||||||||||||| ||||||||||||||||    
T  12949668 taagaaaatgaatggtcagctggaatcacatgtg 12949701  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 17922639 - 17922579
Alignment:
Q  98 accttcttgattttaatttcaggtcttgaacaaaatttctaagtcgtttgtgcaaagagaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  17922639 accttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaa 17922579  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 17922724 - 17922686
Alignment:
Q  43 gcttatggaattagaattttatttttatcatcttgttgt 81  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  17922724 gcttatggaattagaattttattttaatcatcttgttgt 17922686  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 17922554 - 17922521
Alignment:
Q  165 taagaaaatgaatggtccgctggaatcacatgtg 198  Q
    ||||||||||||||||| ||||||||||||||||    
T  17922554 taagaaaatgaatggtcagctggaatcacatgtg 17922521  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 10716294 - 10716248
Alignment:
Q  43 gcttatggaattagaattttatttttatcatcttgttgtgcatttca 89  Q
    ||||||||||||| ||||| || ||||||||||| ||||||||||||    
T  10716294 gcttatggaattataatttgatctttatcatcttattgtgcatttca 10716248  T

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