View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15141_high_3 (Length: 576)
Name: NF15141_high_3
Description: NF15141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15141_high_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 11 - 576
Target Start/End: Original strand, 16962989 - 16963556
Alignment:
| Q |
11 |
caaaggactaatatgaaatgaaaaatatgatctaaatttaacttgtgcactag--tatgaaatgtttatatgtatgtaattatggccttacttgcataaa |
108 |
Q |
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| T |
16962989 |
caaaggactaatatgaaatgaaaaatatgatctaaatttaacttgtgcactacaatatgaaatgtttatgtgtatgtaattatggccttacttgcataaa |
16963088 |
T |
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| Q |
109 |
tatttagtcttgattctcttgaaatatcaacagatctatcttctctttctgctttagactttctcaaaatgaacagaaagagtagaatcaaaagccctac |
208 |
Q |
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| T |
16963089 |
tatttagtcttgattctcttgaaatatcaacagatctatcttctctttctgctttggactttctcaaaatgaacagaaagagtagaatcaaaagccctac |
16963188 |
T |
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| Q |
209 |
aattacaacaaaacctccaataataccaaataatactcctagctgcatcattgattttttcggcttctcaaatctcggcttagcggctaacaccgttgaa |
308 |
Q |
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| T |
16963189 |
aattccaacaaaacctccaataataccaaataatactcctagctgcatcattgattttttcggcttctcaaatctcggcttagcggctaacaccgttgaa |
16963288 |
T |
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| Q |
309 |
ttcttgcactgtgaagatgaatgttgatcactgacatttcttgctgataaacaattaccagaataaactattgttcgattaaccgacaacgtcgaatcga |
408 |
Q |
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| T |
16963289 |
ttcttgcaatgtgaagatgaatgttgatcactgacatttcttgctgataaacaattaccagaataaactattgttcgattcaacgacaatgtcgaatcaa |
16963388 |
T |
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| Q |
409 |
tgcatgatggcaattttccttccagagaattgtttgagatatcaacaaatgttagagaagaaccacaagacatattcatagaaaatgaaccattaaattg |
508 |
Q |
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| T |
16963389 |
tgcatgatggcaattttccttctagagaattgtttgagatatcaacaaatgttagagaagaaccacaagatatattcatagaaaatgaaccattaaattg |
16963488 |
T |
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| Q |
509 |
atttgaagccaagtttagcttctgaatcaaaggaagagagaacagaaatgaaggaaatgcaggtccta |
576 |
Q |
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| T |
16963489 |
atttgaagccaagtttagcttctgaatcaaaggaagagagaacagaaatgaaggaaatccaggtccta |
16963556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 86 - 576
Target Start/End: Original strand, 16215792 - 16216301
Alignment:
| Q |
86 |
aattatggccttacttgcataaatatttagtcttgattctcttgaaatatcaacagatctat---------------cttctctttctgctttagacttt |
170 |
Q |
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| T |
16215792 |
aattgtggccttacttgcataaatatttggtcttgattctcttgaaatatcaacagatctatgatctattttactatcttctctttctgctttagacttt |
16215891 |
T |
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| Q |
171 |
ctcaaaatgaacagaaagagtagaatcaaaagccctacaattacaacaaaacctccaataataccaaataatactcctagctgcatcattgattttttcg |
270 |
Q |
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| T |
16215892 |
ctcaaaatgaacagaaagagtagaatcaaaagccctacaattacaacaaaacctccaataataccaaataatactcctagttgcatcattgattttttcg |
16215991 |
T |
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| Q |
271 |
gcttctcaaatctcggcttagcggctaacaccgttgaattcttgcactgtgaagatgaatgttgatcactgacatttcttgctgataaacaattaccaga |
370 |
Q |
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| T |
16215992 |
gcttatcaaatctcgtctcagcggctaacactgttgaattcttgcaatgtgaagatgaatgttgatcactgatatttcttgctgacaaacaattaccaga |
16216091 |
T |
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| Q |
371 |
ataaactattgttcgattaaccgacaacgtcgaatc----gatgcatgatggcaattttccttccagagaattgtttgagatatcaacaaatgttagaga |
466 |
Q |
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| T |
16216092 |
ataaactattgttcgattaaccgacaacgtcgaatcaattaatgcatgatggcaattttccttctagagaattgtttgagatatcaacaaatgttagaga |
16216191 |
T |
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| Q |
467 |
agaaccacaagacatattcatagaaaatgaaccattaaattgatttgaagccaagtttagcttctgaatcaaaggaagagagaacagaaatgaaggaaat |
566 |
Q |
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| T |
16216192 |
agaaccacaagatatattcatagaaaatgaaccattaaattgatttgaagccaggtttaggttctgtatcaaaggaagagagatcaaaaatgaaggaaat |
16216291 |
T |
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| Q |
567 |
gcaggtccta |
576 |
Q |
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| T |
16216292 |
ccaggtccta |
16216301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 165 - 388
Target Start/End: Original strand, 48892031 - 48892257
Alignment:
| Q |
165 |
gactttctcaaaatgaacagaaagagtagaatcaaaagccctacaattacaacaaaacctccaataataccaaataatactcctagctgcatcattgatt |
264 |
Q |
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||||||||||||||||||||||| | || ||||||||||||| ||||| | ||||||||||||||| || ||| || || |||||| ||| | |||||| |
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| T |
48892031 |
gactttctcaaaatgaacagaaaaaatataatcaaaagccctgcaattcctacaaaacctccaatagtatcaagtattagtcctagttgctcctttgatt |
48892130 |
T |
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| Q |
265 |
ttttcggcttctcaaatctcggcttagcggctaacaccgttgaattcttgcactgtgaagatgaatgttgatcactgacatttcttgctgata---aaca |
361 |
Q |
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| T |
48892131 |
cctacttaccctcaaatctcggattagtggataaggccgtcaatttcttgcaatatgaagatggatgttgatcactgaaacttctagttgacaaacaaca |
48892230 |
T |
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| Q |
362 |
attaccagaataaactattgttcgatt |
388 |
Q |
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| T |
48892231 |
attgccagaataaactatttttcgatt |
48892257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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