View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15141_high_5 (Length: 495)
Name: NF15141_high_5
Description: NF15141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15141_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 3 - 341
Target Start/End: Original strand, 8509646 - 8509984
Alignment:
| Q |
3 |
gatgtaacatgaaaaatatagcatgcataattaatcaccttataaaagtatgtatccatacatgtgaagattgcaagtgcatttcgtattgcaatgaaat |
102 |
Q |
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| T |
8509646 |
gatgtgacataaaatatatagcatgcataattaataaacttataaaagtatgtatacatacatgtgaagtttgctagtgcatttcgtaatgcaataaaat |
8509745 |
T |
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| Q |
103 |
tttacacttttaggataacctattcgtgtctcaatcattctactcttgattcatcccttacattcatctttacaaattactcacatgctaattgaataga |
202 |
Q |
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| T |
8509746 |
tttgcacttttaggataacctattcatgtctcaatcattctactcttgatacatcccttacattcatctttacaaattactcacatgctaattgaataga |
8509845 |
T |
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| Q |
203 |
actatactttaccnnnnnnnttaaaattggatagaagtagaactatagaagaacactagcaactatcaaatttgtaaaataactatgaaatataccccac |
302 |
Q |
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| T |
8509846 |
actatactttaccaaaaaaattaaaattggatagaagtagaactatagaagaacactagcaactatcaaatttgtaaaataactatgaaatataccccac |
8509945 |
T |
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| Q |
303 |
accctattccaccctgcaaaatccctttgcatatcatga |
341 |
Q |
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| T |
8509946 |
accctattccaccctgcaaaatccctttgcatatcatga |
8509984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 395 - 480
Target Start/End: Original strand, 8510038 - 8510123
Alignment:
| Q |
395 |
ccccctccctttgctcctaacacctctaataatgtaagatttgaccaaaccccatcattagatatgggtttaatctatgtgttttg |
480 |
Q |
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| T |
8510038 |
ccccctccctttgctcctaacacctctaataatgtaaggtttgaccaaaccccatcattagatatgggtttaatctatgtgttttg |
8510123 |
T |
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