View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15141_low_1 (Length: 778)
Name: NF15141_low_1
Description: NF15141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15141_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 643; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 17 - 771
Target Start/End: Original strand, 39593267 - 39594025
Alignment:
| Q |
17 |
cacttatatatgtggcaacattcaattgtttaattttttaaaattattaattaccggtgtcgacgtgtaaatgtcatgtcatacgaattaatattcattt |
116 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39593267 |
cacttatatatgtggctacattcaattaattaattttt-aaaattattaattaccggtgtcgacgtgtaaatgtcatgtcatacgaattaatattcattt |
39593365 |
T |
|
| Q |
117 |
ctttattacctgccaggctttattattccactaacatcctgaagaatattcacatgttgtcttcttcttcttagtatagagttcaatggagcctttgaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39593366 |
ctttattacctgccaggctttattattccactaacatcctgaagaatattcacatgttgtcttcttcttcttagaatagagttcaatggagcctttgaaa |
39593465 |
T |
|
| Q |
217 |
tccnnnnnnnnnnnnnnnn--ttaatgtattaaagtattctccaatatcaaaactattgatattgatttttgaatgtcattatttacatagtactactac |
314 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39593466 |
taaaataaaaaaataaaaaaattaatgtattagagtattctccaatatcaaaacaattgatattgatttttgaatgtcattatttacatagtactactac |
39593565 |
T |
|
| Q |
315 |
atacctctaccatatcaagagtgtaattagtgagggtaggtaaagctctctttcctgcatgaacttctgtttcaatcttcaaattttcaaatcgaacttc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39593566 |
atacctctaccatatcaagagtgtaattagtgagggtaggtaaagctctctttcctgcatgaacttctgtttcaatcttcaaattttcaaatcgaacttc |
39593665 |
T |
|
| Q |
415 |
aattgtaggaatatcaactccaactctgttatatcataagtacatttttataagctaggataaaataaaatataaaagattgaaaaatgttacctatcaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39593666 |
aattgtaggaatatcaactccaactctgttatatcataagtacatttttataagctaggataaaataaaatataaaagattgaaaaatgttacctatcaa |
39593765 |
T |
|
| Q |
515 |
tgcgatccttaagcttcaacaacaaattttcattatcagcatcagcaattctcactagtctttctaacaaatattttctttcttgtaatccaattttgtg |
614 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39593766 |
tgcgatccttaagcttcaacaagaaattttcattatcagcatcagcaattctcactagtctttctaacaaatattttctttcttgtaatccaattttgtg |
39593865 |
T |
|
| Q |
615 |
aacatcaatttcattagcctctccttcagagttaatcaataaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcc |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39593866 |
aacatcaatttcattagcctctccttcagagttaatcaataaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcc |
39593965 |
T |
|
| Q |
715 |
tc---ttcatcataactctccattttttatgcctccaaaacactcaatgttgttcctatg |
771 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39593966 |
tctaattcatcataactctccattttttatgcctccaaaacactcaatgttgttcctatg |
39594025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 39578566 - 39578663
Alignment:
| Q |
122 |
ttacctgccaggctttattattccactaacatcctgaagaatattcacatgttgtcttcttcttcttagtatagagttcaatggagcctttgaaatcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
39578566 |
ttacctgccaggctttattattccactaatatcctttagaatattcacatgctgtcttcttcttcttagtatatagttcaatggagcctttgaaatcc |
39578663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 499 - 724
Target Start/End: Original strand, 39585317 - 39585542
Alignment:
| Q |
499 |
aaatgttacctatcaatgcgatccttaagcttcaacaacaaattttcattatcagcatcagcaattctcactagtctttctaacaaatattttctttctt |
598 |
Q |
| |
|
|||||| |||||| |||||||||| | |||||||| ||||| || ||||| ||| |||| ||||||||||| ||||| |||| || ||| | ||||||| |
|
|
| T |
39585317 |
aaatgtcacctatgaatgcgatccctgagcttcaataacaatttctcattgtcaacatctgcaattctcaccagtctatctatcaggtatctcctttctt |
39585416 |
T |
|
| Q |
599 |
gtaatccaattttgtgaacatcaatttcattagcctctccttcagagttaatcaataaacctcttctcaaacgtgtaacagttggaagtctctgaattgc |
698 |
Q |
| |
|
| |||| ||||| |||||||||||| | ||| ||||| |||| || |||| |||||||| ||||| |||| |||||| ||||| ||||||||||| |
|
|
| T |
39585417 |
gctgcccaagtttgtatacatcaatttcacaaacctgtcctttagaggtagtcaacaaacctctcctcaagcgtgcaacagtcggaagcctctgaattgc |
39585516 |
T |
|
| Q |
699 |
agcccattttaaagcctcttcatcat |
724 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
39585517 |
agcccatttcaaagcctcttcatcat |
39585542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 506 - 722
Target Start/End: Original strand, 39578994 - 39579210
Alignment:
| Q |
506 |
acctatcaatgcgatccttaagcttcaacaacaaattttcattatcagcatcagcaattctcactagtctttctaacaaatattttctttcttgtaatcc |
605 |
Q |
| |
|
|||||| |||||||||| | |||||||| ||||| || ||||| ||| |||| ||||||||||| ||||| |||| || ||| | |||||||| || |
|
|
| T |
39578994 |
acctatgaatgcgatccctgagcttcaataacaatttctcattgtcaacatctgcaattctcaccagtctatctatcaggtatctcctttcttgctgccc |
39579093 |
T |
|
| Q |
606 |
aattttgtgaacatcaatttcattagcctctccttcagagttaatcaataaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccat |
705 |
Q |
| |
|
|| |||| |||||||||||| | ||| ||||| |||| || |||| |||||||| ||||| |||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
39579094 |
aagattgtatacatcaatttcacaaacctgtcctttagaggtagtcaacaaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccat |
39579193 |
T |
|
| Q |
706 |
tttaaagcctcttcatc |
722 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
39579194 |
ttcaaagcctcttcatc |
39579210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 317 - 442
Target Start/End: Original strand, 39578752 - 39578877
Alignment:
| Q |
317 |
acctctaccatatcaagagtgtaattagtgagggtaggtaaagctctctttcctgcatgaacttctgtttcaatcttcaaattttcaaatcgaacttcaa |
416 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||| |||||| | |||||||||| || || ||||| | |||||||| ||||| | |
|
|
| T |
39578752 |
acctctaccatatcaagaacgtaattagtgagggtaggcaaagctctttttcctacgtgaacttctgcctcgatattcaagtgctcaaatcggacttcga |
39578851 |
T |
|
| Q |
417 |
ttgtaggaatatcaactccaactctg |
442 |
Q |
| |
|
||||||||| || || |||||||||| |
|
|
| T |
39578852 |
ttgtaggaagattaattccaactctg |
39578877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 39584401 - 39584503
Alignment:
| Q |
122 |
ttacctgccaggctttattat--tccactaacatcctgaagaatattcacatgttg---tcttcttcttcttagtatagagttcaatggagcctttgaaa |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
39584401 |
ttacctgccaggctttattatattccactaacatccttgagaatgttcacatgttgtcttcttcttcttcttagtatatagttcagtggaacctttgaaa |
39584500 |
T |
|
| Q |
217 |
tcc |
219 |
Q |
| |
|
||| |
|
|
| T |
39584501 |
tcc |
39584503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 582 - 707
Target Start/End: Original strand, 39626261 - 39626386
Alignment:
| Q |
582 |
caaatattttctttcttgtaatccaattttgtgaacatcaatttcattagcctctccttcagagttaatcaataaacctcttctcaaacgtgtaacagtt |
681 |
Q |
| |
|
||||||| |||||||||| || ||||||||||| |||||||||||||| | |||||||||| | ||||||||||||| |||||||||| ||| ||| |
|
|
| T |
39626261 |
caaatatgttctttcttgcaacccaattttgtgtacatcaatttcattggagtctccttcaggagtggtcaataaacctctcctcaaacgtgcaactgtt |
39626360 |
T |
|
| Q |
682 |
ggaagtctctgaattgcagcccattt |
707 |
Q |
| |
|
||||| |||||||||| | ||||||| |
|
|
| T |
39626361 |
ggaagcctctgaattgaatcccattt |
39626386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 39625783 - 39625892
Alignment:
| Q |
110 |
ttcatttctttattacctgccaggctttattattccactaacatcctgaagaatattcacatgttgtcttcttcttcttagtatagagttcaatggagcc |
209 |
Q |
| |
|
|||||||| | ||||||||| | |||||| |||||||| |||||||| |||||||||| |||||| |||||||| |||||||| | ||||| ||| || |
|
|
| T |
39625783 |
ttcatttcataattacctgctatgctttaaaattccactgacatcctgtagaatattcaattgttgttttcttctttttagtatatatttcaacggaacc |
39625882 |
T |
|
| Q |
210 |
tttgaaatcc |
219 |
Q |
| |
|
|||||||||| |
|
|
| T |
39625883 |
tttgaaatcc |
39625892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 309 - 443
Target Start/End: Original strand, 39625967 - 39626101
Alignment:
| Q |
309 |
tactacatacctctaccatatcaagagtgtaattagtgagggtaggtaaagctctctttcctgcatgaacttctgtttcaatcttcaaattttcaaatcg |
408 |
Q |
| |
|
|||||| ||||||||| | ||||| |||| ||||||| ||| | ||||||||||||||| ||||||||| || || | ||||| | |||||||| |
|
|
| T |
39625967 |
tactacttacctctactaggtcaagcatgtagttagtgattgtatgcaaagctctctttcctacatgaacttgtgcttggacattcaagtgctcaaatcg |
39626066 |
T |
|
| Q |
409 |
aacttcaattgtaggaatatcaactccaactctgt |
443 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| |
|
|
| T |
39626067 |
aacttcaattgtaggaatgtcaactccagctctgt |
39626101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 442
Target Start/End: Original strand, 39569233 - 39569334
Alignment:
| Q |
341 |
ttagtgagggtaggtaaagctctctttcctgcatgaacttctgtttcaatcttcaaattttcaaatcgaacttcaattgtaggaatatcaactccaactc |
440 |
Q |
| |
|
||||||| |||||| |||| ||| ||||| || || |||||| ||| || |||| | ||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
39569233 |
ttagtgaaggtaggcaaagatctgcttcctacacgagcttctgcttcgatattcaggtgttcgaatcgaacttctattgtaggaagatcaactccaactc |
39569332 |
T |
|
| Q |
441 |
tg |
442 |
Q |
| |
|
|| |
|
|
| T |
39569333 |
tg |
39569334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 724
Target Start/End: Complemental strand, 39344226 - 39344157
Alignment:
| Q |
655 |
aaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcctcttcatcat |
724 |
Q |
| |
|
|||||| | ||||||||| || ||| |||||| ||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
39344226 |
aaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcat |
39344157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 39359362 - 39359313
Alignment:
| Q |
132 |
ggctttattattccactaacatcctgaagaatattcacatgttgtcttct |
181 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||| |||| |
|
|
| T |
39359362 |
ggctttattattccactaacatccttgagaatatttagatgttgttttct |
39359313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 724
Target Start/End: Original strand, 39552745 - 39552814
Alignment:
| Q |
655 |
aaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcctcttcatcat |
724 |
Q |
| |
|
|||||| | ||||||||| || ||| |||||| ||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
39552745 |
aaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcat |
39552814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 405 - 443
Target Start/End: Original strand, 44237799 - 44237837
Alignment:
| Q |
405 |
atcgaacttcaattgtaggaatatcaactccaactctgt |
443 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
44237799 |
atcgaacttcaattgttggaatatcaagtccaactctgt |
44237837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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