View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15141_low_4 (Length: 570)
Name: NF15141_low_4
Description: NF15141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15141_low_4 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 10 - 536
Target Start/End: Complemental strand, 5092851 - 5092323
Alignment:
| Q |
10 |
gaagcaaagggatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcataaagtttattttccatggaaagcacaaccttcc |
109 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5092851 |
gaagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcataaagtttattttccatggaaagcacaaccttcc |
5092752 |
T |
|
| Q |
110 |
tcttagattttcgctctagtttatctcgcaccttgtcggggtccacttttccaataaccttcaatgtattactagagcggtcagtttcaatgctctctac |
209 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
5092751 |
tcttagatttttgctctagtttatctcgcaccttgtcggggtccgcttttccaataaccttcaatgtattactagagcagtcagattcaacgctctctac |
5092652 |
T |
|
| Q |
210 |
acctgcatcgtgaaccaaatgaattaactctaccaatcaatgtcctcaaagaaatagctt--tggtatgggctgaaatactaaaagaattcaatgaacct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
5092651 |
acctgcatcgtgaaccaaatgaattaactctaccaatcaatgtcctcgaagaaatagcttagtggtatgggccgaaatactaaaagaattcaatgaacct |
5092552 |
T |
|
| Q |
308 |
gtttctaacatttccttcttccctactaaattaattactaacattttcctatnnnnnnncaacactgcaatgatccgtggtcaatttaatttacattcca |
407 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
5092551 |
gttactaacatttccttcttccctactaaattaattactaacattttcctataaaaaaacaacactgcaatgatccgtggtcaatttaatttacgttccg |
5092452 |
T |
|
| Q |
408 |
gcacaccaaaaattctagaggaaactgagaccaagagtagtttttaaacacccatgctcctcaacccaccaaaataacttttaaggatttgtttggattg |
507 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
5092451 |
gcacaccaaaaattctagaggaaactgagaccaatagtagtttttaaacacccatgctcctcaacccaccaaaatgacttttaaggatttgtttggatag |
5092352 |
T |
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| Q |
508 |
acgaaatagggtggaatggagtggtatga |
536 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5092351 |
acgaaatagggtggaatggagtggtatga |
5092323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 5160699 - 5160945
Alignment:
| Q |
20 |
gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcataaagtttattttccatggaaagcacaaccttcctcttagattt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | | |||||||||| | |
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| T |
5160699 |
gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcataaagtctattttccagggaaagccccaacttcctcttaagctg |
5160798 |
T |
|
| Q |
120 |
tcgctctagtttatctcgcaccttgtcggggtccacttttccaataaccttcaatgtattactagagcggtcagtttcaatgctctctacacctgcatcg |
219 |
Q |
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|| || || |||||||||||| || ||||| ||||||||| |||||||||| |||||| || | ||| ||||| ||||| |||||||||||| |
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| T |
5160799 |
agtctgtaattcatctcgcaccttctccgggtcagcttttccaaaaaccttcaatctattaccggacagatcatattcaactctctccacacctgcatcg |
5160898 |
T |
|
| Q |
220 |
tgaaccaaatgaattaactctaccaatcaatgtcctcaaagaaatagcttt |
270 |
Q |
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||||| ||| ||||| |||||||||||||||| ||||||||||||| |
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| T |
5160899 |
----acaaataaatcaactccaccaatcaatgtcctccaagaaatagcttt |
5160945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 5422117 - 5422050
Alignment:
| Q |
9 |
agaagcaaagggatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcat |
76 |
Q |
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||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| |
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| T |
5422117 |
agaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcat |
5422050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 5149892 - 5149959
Alignment:
| Q |
9 |
agaagcaaagggatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcat |
76 |
Q |
| |
|
||||||| || ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| |
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| T |
5149892 |
agaagcatagagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaacttaagaacacttcat |
5149959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 5444007 - 5443951
Alignment:
| Q |
20 |
gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcat |
76 |
Q |
| |
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||||||||||||| || |||||||||||||| |||||||||||||||||||| |||| |
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| T |
5444007 |
gatgtgaagtgaaggaagcacgagtatctttccctctaaaacttaagaacacgtcat |
5443951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 5340457 - 5340387
Alignment:
| Q |
20 |
gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcataaagtttattttcc |
90 |
Q |
| |
|
||||||||||||| ||| ||||||| || || ||||||||||| || |||||||||| ||||||||||||| |
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| T |
5340457 |
gatgtgaagtgaaggatacacgagtgtccttccctctaaaactcaaaaacacttcatgaagtttattttcc |
5340387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 5107970 - 5108037
Alignment:
| Q |
9 |
agaagcaaagggatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcat |
76 |
Q |
| |
|
||||||| || ||||||||||||| || |||||||||||||| ||||| ||||||| |||||| |||| |
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| T |
5107970 |
agaagcatagagatgtgaagtgaaggaagcacgagtatctttgcctctgaaacttaggaacacgtcat |
5108037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 5139750 - 5139807
Alignment:
| Q |
20 |
gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcata |
77 |
Q |
| |
|
||||||||||||| |||| |||||| ||||| |||| |||||||| |||||||||||| |
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| T |
5139750 |
gatgtgaagtgaaggatgaacgagtgtctttccctcaaaaacttaggaacacttcata |
5139807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 5429513 - 5429446
Alignment:
| Q |
9 |
agaagcaaagggatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcat |
76 |
Q |
| |
|
||||||| || ||||||||||||| ||| | |||||||||| ||||||||||||| |||||| |||| |
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|
| T |
5429513 |
agaagcatagagatgtgaagtgaacgatcctcgagtatcttcgcctctaaaacttaggaacacgtcat |
5429446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 5185057 - 5185113
Alignment:
| Q |
20 |
gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcat |
76 |
Q |
| |
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|||||||||| || || | ||||||||||| |||||||||||||||||||| |||| |
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| T |
5185057 |
gatgtgaagtaaaggaagaacgagtatcttcccctctaaaacttaagaacacatcat |
5185113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 6639 - 6703
Alignment:
| Q |
10 |
gaagcaaagggatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttc |
74 |
Q |
| |
|
|||||| || |||||||||||||||| | ||||||| || ||||||||||||||||||||||| |
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|
| T |
6639 |
gaagcatagagatgtgaagtgaatgaaacgtgagtatcgttccctctaaaacttaagaacacttc |
6703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 4332549 - 4332498
Alignment:
| Q |
20 |
gatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacac |
71 |
Q |
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||||||||||||||||||| ||||| |||| ||||||||||| |||||||| |
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| T |
4332549 |
gatgtgaagtgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacac |
4332498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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