View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15141_low_6 (Length: 417)
Name: NF15141_low_6
Description: NF15141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15141_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 40599286 - 40599582
Alignment:
| Q |
20 |
gtagatgtatatattgtgaagtgtgatgtgatcagcttccaactagactctatatatgagatatcatcaagtcaagtccacacttttgtgtagtaacaat |
119 |
Q |
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| T |
40599286 |
gtagatgtatatattgtgaagtgtgatgtgatcagcttccaactagactctatatatgagatatcatcaagtcaagtccacacttttgtgtagtaacaat |
40599385 |
T |
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| Q |
120 |
aatgatggctatgtgattatttcatttcataggaagcttcatttataaataagaagctgattcaaacttgaactcaccaaaacttacaagaaagaaacaa |
219 |
Q |
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| T |
40599386 |
aatgatggctatgtgattattt-----cataggaagcttcatttataaataagaagctgattcaaacttgaactcaccaaaacttacaagaaagaaacaa |
40599480 |
T |
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| Q |
220 |
gtagtcaacctggtttgtttcttcaacgaaaatacagagaagatagaatggggtcctacttcaattattaatcttggttcggaaaatctgtgggcatata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40599481 |
gtagtcaacctggtttgtttcttcaacgaaaatacagagaagatagaatggggtcctacttcaattattaatcttggttcggaaaatctgtgggcatata |
40599580 |
T |
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