View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15141_low_7 (Length: 385)

Name: NF15141_low_7
Description: NF15141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15141_low_7
NF15141_low_7
[»] chr3 (1 HSPs)
chr3 (10-385)||(25346102-25346481)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 25346481 - 25346102
Alignment:
Q  10 ttttggtgtttgtttcaatctgattttgattcaaatgagggagtatgatgaacaacttttgttctgtttttaccttgtattgtttcttatgtttttagca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25346481 ttttggtgtttgtttcaatctgattttgattcaaatgagggagtatgatgaacaacttttgttctgtttttaccttgtattgtttcttatgtttttagca 25346382  T
Q  110 gcaaaagggaaaaactagagatttgttttattcatttttatgaaatgttaggtgataaatcatttagataggtttcagttagatatattctggttttgac 209  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25346381 gaaaaagggaaaaactagagatttgttttattcatttttatgaaatgttaggtgataaatcatttagataggtttcagttagatatattctggttttgac 25346282  T
Q  210 tatttgaatttgatatagagatatttcagttctgctagaattcaatttggctcttttgg---ttaggttg-nnnnnnntactaaaacattccatttctaa 305  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   ||||||||        ||||||||||||||||||||||    
T  25346281 tatttgaatttgatatagagagatttcagttctggtagaattcaatttggctcttttggttattaggttgaaaaaaaatactaaaacattccatttctaa 25346182  T
Q  306 gattaggacttagttataactataaaatattttctttttatcttgatgcaattcttataataccaacttggtcttgtttc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25346181 gattaggacttagttataactataaaatattttctttttatcttgatgcaattcttataataccaacttggtcttgtttc 25346102  T

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