View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15141_low_8 (Length: 345)
Name: NF15141_low_8
Description: NF15141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15141_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 25480563 - 25480364
Alignment:
| Q |
1 |
ttcatcacatcaatggtgcatcttcttctcaaggtaaggtttctaattgctgaattgtcgatgcaaaagtgagccaccaaccatactacctcttctttcc |
100 |
Q |
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| T |
25480563 |
ttcatcacatcaatgttgcatcttcttctcaaggtaaggtttctacttggtgaattgtcaatgcaaaagtgagccaccaaccatactacctcttctttcc |
25480464 |
T |
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| Q |
101 |
atagggtcaaatacaatccgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaactaaaacctagttgaa |
200 |
Q |
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| T |
25480463 |
atagggtcaaatacaatctgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaacttaaacctagttgaa |
25480364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 25863542 - 25863741
Alignment:
| Q |
1 |
ttcatcacatcaatggtgcatcttcttctcaaggtaaggtttctaattgctgaattgtcgatgcaaaagtgagccaccaaccatactacctcttctttcc |
100 |
Q |
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| T |
25863542 |
ttcatcacatcaatgttgcatcttcttctcaaggtaaggtttctacttggtgaattgtcaatgcaaaagtgagccaccaaccatactacctcttctttcc |
25863641 |
T |
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| Q |
101 |
atagggtcaaatacaatccgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaactaaaacctagttgaa |
200 |
Q |
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| T |
25863642 |
atagggtcaaatacaatctgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaacttaaacctagttgaa |
25863741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 25606231 - 25606342
Alignment:
| Q |
99 |
ccatagggtcaaatacaatccgagactcaccagacatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaactaaaacctagttg |
198 |
Q |
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||||||| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25606231 |
ccataggatgaaatacaatccgagactcactatgcatattttcctttttgtcatgtttccttttaaccttctcaagcattgtaaaacttaaacctagttg |
25606330 |
T |
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| Q |
199 |
aatggctggtaa |
210 |
Q |
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| T |
25606331 |
tatggctggtaa |
25606342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 25606452 - 25606520
Alignment:
| Q |
263 |
actctaaggaagtcgatatttgtaccaattcatttttgtcagtatgaaaaccgcctgttgtgctgtttg |
331 |
Q |
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| T |
25606452 |
actctaaggaagtcgatatttgtaccaattcatttttgtcagtatgaacaccgcctgttgggctgtttg |
25606520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 25608518 - 25608562
Alignment:
| Q |
2 |
tcatcacatcaatggtgcatcttcttctcaaggtaaggtttctaa |
46 |
Q |
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|||||||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
25608518 |
tcatcacatcgatgttgcatcttcttctagaggtaaggtttctaa |
25608562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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