View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15141_low_9 (Length: 328)

Name: NF15141_low_9
Description: NF15141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15141_low_9
NF15141_low_9
[»] chr1 (2 HSPs)
chr1 (15-328)||(40644853-40645169)
chr1 (15-328)||(40653535-40653851)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 40645169 - 40644853
Alignment:
Q  15 actgctaaaaaagatgaaggatatcatgttacattagaag---ttgatgaaactactccctcatcatcggaacataattatcaaggggaaaccaaaattc 111  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  40645169 actgctaaaaaagatgaaggatatcatgttacattagaagaagttgatgaaactactccctcattattggaacataattatcaaggggaaaccaaaattc 40645070  T
Q  112 caaatccaaatattccacatgcgcgagctttacacgatggattaaaattctacaaaattcctgagtgcctatttgcagatcttatccttagttttcaaga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40645069 caaatccaaatattccacatgcgcgagctttacacgatggattaaaattctacaaaattcctgagtgcctatttgcagatctcatccttagttttcaaga 40644970  T
Q  212 ccacaaaaccagccaattattttttcagaacatggattgggaacatgcttttgcagtaattgcagttgagctaggattggtgtatgatatgctatataca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40644969 ccacaaaaccagccaattattttttcagaacatggattgggaacatgcttttgaagtaattgcagttgagctaggattggtgtatgatatgctatataca 40644870  T
Q  312 aaggcagtgttaacata 328  Q
    |||||||||||||||||    
T  40644869 aaggcagtgttaacata 40644853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 40653851 - 40653535
Alignment:
Q  15 actgctaaaaaagatgaaggatatcatgttacattagaag---ttgatgaaactactccctcatcatcggaacataattatcaaggggaaaccaaaattc 111  Q
    |||||||||||||| ||||| ||||||||||| ||||| |   || ||||||||||||||| |  || ||| | ||||| |||||||| ||||||||| |    
T  40653851 actgctaaaaaagaagaagggtatcatgttaccttagatgaaattaatgaaactactcccttagtattggatcctaattctcaagggggaaccaaaatac 40653752  T
Q  112 caaatccaaatattccacatgcgcgagctttacacgatggattaaaattctacaaaattcctgagtgcctatttgcagatcttatccttagttttcaaga 211  Q
    ||||| |||| |||||| ||   | ||||||||  |||||||| ||||||||||| |||||||||||||||||||||||||| ||| | |||||||||||    
T  40653751 caaatacaaaaattccagattgtcaagctttacgtgatggattcaaattctacaacattcctgagtgcctatttgcagatctcatcttcagttttcaaga 40653652  T
Q  212 ccacaaaaccagccaattattttttcagaacatggattgggaacatgcttttgcagtaattgcagttgagctaggattggtgtatgatatgctatataca 311  Q
    |||||||| ||||||||  ||||||||  |     | ||| || ||||||||  || |||||  ||||||||||||||  | ||||||||  ||||||||    
T  40653651 ccacaaaagcagccaatatttttttcaagattctaactggaaagatgcttttaaagcaattgaggttgagctaggattaatatatgatattttatataca 40653552  T
Q  312 aaggcagtgttaacata 328  Q
    ||||||||| |||||||    
T  40653551 aaggcagtgataacata 40653535  T

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