View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15142_low_2 (Length: 238)
Name: NF15142_low_2
Description: NF15142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15142_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 306579 - 306367
Alignment:
| Q |
18 |
aaaaggccaacaaaatgtaaatacacaccaatcggatatatagtccacaagaccacaaatagaaattatcaatttttatgagaaacttgctctttagaca |
117 |
Q |
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| T |
306579 |
aaaagcccaacaaaatgtaaatacacaccaatcggatatatagtccacaa--------atagaaattatcaatttttatgagaaacttgctctttagaca |
306488 |
T |
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| Q |
118 |
cccttcgtttgctcccaggcactcaaaatacctccaacaacattaactattgtttgctggtcaatggtagttacctaccgtttcaaacatgtcatatata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
306487 |
cccttcgtttgctcccaggcactcaaaatacctccaacaacattaactattgtttgctggtcaatggtagttacctaccgtttcaaacatgtcatatata |
306388 |
T |
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| Q |
218 |
gaaacccaaacacattcctag |
238 |
Q |
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||||||||||||||||||||| |
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| T |
306387 |
gaaacccaaacacattcctag |
306367 |
T |
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