View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15142_low_4 (Length: 217)
Name: NF15142_low_4
Description: NF15142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15142_low_4 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: scaffold0294 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 16648 - 16461
Alignment:
| Q |
17 |
caagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagcccaaatattgacattctt |
116 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||||||||||||| |||||||| |
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| T |
16648 |
caagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagaggaagtagagaagcagttccagcccaaatattcacattctt |
16549 |
T |
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| Q |
117 |
agcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatatcctctctgct |
204 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||||| | ||||||||||||||||| |
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| T |
16548 |
agcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaatatatgatatcctctctgct |
16461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 11702003 - 11701817
Alignment:
| Q |
17 |
caagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagcccaaatattgacattctt |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| |||| ||| ||||||||||||| ||| |||||||| |
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| T |
11702003 |
caagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagcccaaacatttacattctt |
11701904 |
T |
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| Q |
117 |
agcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatatcctctctgc |
203 |
Q |
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| T |
11701903 |
agcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgc |
11701817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 11676108 - 11675924
Alignment:
| Q |
19 |
agtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagcccaaatattgacattcttag |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||| |||| ||||||||||||||| ||||||| || |
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| T |
11676108 |
agtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcag |
11676009 |
T |
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| Q |
119 |
cagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatatcctctctgc |
203 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||| |
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| T |
11676008 |
cagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgc |
11675924 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 11684387 - 11684203
Alignment:
| Q |
19 |
agtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagcccaaatattgacattcttag |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||| |||| ||||||||||||||| ||||||| || |
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| T |
11684387 |
agtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcag |
11684288 |
T |
|
| Q |
119 |
cagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatatcctctctgc |
203 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||| |
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| T |
11684287 |
cagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgc |
11684203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 11696206 - 11696020
Alignment:
| Q |
17 |
caagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagcccaaatattgacattctt |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||| ||||||||||||||||||||| ||||| | |
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| T |
11696206 |
caagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttc |
11696107 |
T |
|
| Q |
117 |
agcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatatcctctctgc |
203 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||| |
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| T |
11696106 |
agcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgc |
11696020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 11798047 - 11797861
Alignment:
| Q |
17 |
caagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagcccaaatattgacattctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||| |||||||||| |||||| ||| ||||| | |
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| T |
11798047 |
caagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaacccaaacattcacattttc |
11797948 |
T |
|
| Q |
117 |
agcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatatcctctctgc |
203 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||| |
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| T |
11797947 |
agcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgc |
11797861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 11779185 - 11778999
Alignment:
| Q |
17 |
caagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagcccaaatattgacattctt |
116 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
11779185 |
caagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattctt |
11779086 |
T |
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| Q |
117 |
agcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatatcctctctgc |
203 |
Q |
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|||||| ||| ||||||||||||||||||| |||||||||||||||||||| || |||| || |||| || |||| ||||||||||| |
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| T |
11779085 |
agcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaagtttcccttaaccccaaaatatgacatcctctctgc |
11778999 |
T |
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