View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15143_low_2 (Length: 221)
Name: NF15143_low_2
Description: NF15143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15143_low_2 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 24639225 - 24639012
Alignment:
| Q |
8 |
gacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttgttctgagttagctatgaaggattatggtccactgagttactt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639225 |
gacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgaaactccttgttctgagttagctatgaaggattatggtccactgagttactt |
24639126 |
T |
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| Q |
108 |
cttgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639125 |
cttgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaaa |
24639026 |
T |
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| Q |
208 |
ccttttgctactcc |
221 |
Q |
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|||| ||||||||| |
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| T |
24639025 |
ccttctgctactcc |
24639012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 48100340 - 48100126
Alignment:
| Q |
8 |
gacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttg-ttctgagttagctatgaaggattatggtccactgagttact |
106 |
Q |
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||||||||||||||||||||||| || || |||| |||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||| | |
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| T |
48100340 |
gacatcatcctcatcacctcctcccatgagcttcgaaaatccatcatggcactccttgcctctgagtttgctatgaaggatctgggtccactgagttatt |
48100241 |
T |
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| Q |
107 |
tcttgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaa |
206 |
Q |
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| T |
48100240 |
ttttgggcattgccgtgactagacatgttggtgggattttccttagtcagagtatctatgttggtgaaatcattgcccgcgcaggcatggcctcgtgcaa |
48100141 |
T |
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| Q |
207 |
accttttgctactcc |
221 |
Q |
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||||| ||||||||| |
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| T |
48100140 |
accttctgctactcc |
48100126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 21877629 - 21877418
Alignment:
| Q |
11 |
atcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttg-ttctgagttagctatgaaggattatggtccactgagttacttct |
109 |
Q |
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|||||||||||||||||||| || |||||||| |||||||||||| |||| |||| |||||||| |||||||||||| |||||| ||||||||||| |
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| T |
21877629 |
atcatcctcatcacctcctcccatgatcttcataaatccatcatggcactacttgcctctgagtttactatgaaggatttgggtccattgagttacttcc |
21877530 |
T |
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| Q |
110 |
tgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaaacc |
209 |
Q |
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|||||| | | ||||||||||||||| | | | | || | ||||| |||||||||||||||| | |||||||||||| || |||||||| |||||||| |
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| T |
21877529 |
tgggcactttcgtgaccagacatgctggtaggattttccctagtcagagtatttatgctagtgactttattgctcgagtagacatggccttgtgcaaacc |
21877430 |
T |
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| Q |
210 |
ttttgctactcc |
221 |
Q |
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|| ||||||||| |
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| T |
21877429 |
ttctgctactcc |
21877418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 44386707 - 44386921
Alignment:
| Q |
8 |
gacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttg-ttctgagttagctatgaaggattatggtccactgagttact |
106 |
Q |
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||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||| |||||||| || || ||||||| |||||||||||||| | |
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| T |
44386707 |
gacatcatcctcatcacatcctcccatgatcttcggaaatccatcatgacactccttgcatctgagtttgccattaaggatttgggtccactgagttatt |
44386806 |
T |
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| Q |
107 |
tcttgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaa |
206 |
Q |
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| ||||||||| ||||| | ||||| | | |||| ||||| || |||| |||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44386807 |
ttttgggcatttccgtgactaaacatgatggtggactcttcctcagccagagtacctatgctagtgatattattgctcgagcaggcatggcctcgtgcaa |
44386906 |
T |
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| Q |
207 |
accttttgctactcc |
221 |
Q |
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||||| ||||||||| |
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| T |
44386907 |
accttctgctactcc |
44386921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 9933058 - 9932844
Alignment:
| Q |
8 |
gacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactccttg-ttctgagttagctatgaaggattatggtccactgagttact |
106 |
Q |
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||||||||||||||||||||||| || || |||| |||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||| | |
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| T |
9933058 |
gacatcatcctcatcacctcctcccatgagcttcgaaaatccatcatggcactccttgcctctgagtttgctatgaaggatctgggtccactgagttatt |
9932959 |
T |
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| Q |
107 |
tcttgggcattgttgtgaccagacatgctcgcaagttcttactcagtcaaagtatttatgctagtggcattattgctcgagcaggcatggcctcatgcaa |
206 |
Q |
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| |||||||||| ||||| ||||||| | | | | || || ||||| ||||| |||||| ||| || ||||| || |||||||||||||| ||||| |
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| T |
9932958 |
ttttgggcattgccgtgactagacatgttggtgggattttccttagtcagagtatctatgctggtgaaatcattgcccgcgcaggcatggcctcgtgcaa |
9932859 |
T |
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| Q |
207 |
accttttgctactcc |
221 |
Q |
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||||| ||||||||| |
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| T |
9932858 |
accttctgctactcc |
9932844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 23583380 - 23583500
Alignment:
| Q |
8 |
gacatcatcctcatcacctcctctcacgatcttcagaaatccatcatgacactcctt-gttctgagttagctatgaaggattatggtccactgagttact |
106 |
Q |
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||||||||||| ||||||||||| || |||||| ||||| |||||| |||||||| |||||||| ||||||||||||| |||||| || |||| | |
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| T |
23583380 |
gacatcatccttatcacctcctcccattatcttcgaaaatctatcatggcactccttacctctgagtttgctatgaaggatttgggtccattgtgttatt |
23583479 |
T |
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| Q |
107 |
tcttgggcattgttgtgacca |
127 |
Q |
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| || ||||||| ||||||| |
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| T |
23583480 |
tttttggcattgccgtgacca |
23583500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 23583548 - 23583594
Alignment:
| Q |
175 |
attattgctcgagcaggcatggcctcatgcaaaccttttgctactcc |
221 |
Q |
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|||||||| ||||||||||||||||| |||||||||| | ||||||| |
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| T |
23583548 |
attattgcccgagcaggcatggcctcgtgcaaaccttctactactcc |
23583594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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