View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15144_high_1 (Length: 433)
Name: NF15144_high_1
Description: NF15144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15144_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 3 - 415
Target Start/End: Original strand, 398244 - 398666
Alignment:
| Q |
3 |
gagcaatttaatttgatgattatcttccatgccccgcactgtcataactttagagctatccacgtgctatggttttgaaaagtaagatatgatgaatgaa |
102 |
Q |
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| T |
398244 |
gagcaatttaatttgatgattatcttccatgccccgcactgtcataactttagagctatccacgtgctatggttttgaaaagtaagatatgatgaatgaa |
398343 |
T |
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| Q |
103 |
tactgaataaatactatagtgttggcacttggcatgcattgtttttgagtaattatt-----tattattataagtttcatagaaaagaaggagggtccac |
197 |
Q |
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| T |
398344 |
tactgaataaatactatagtgtg-----ttggcatgcattgtttttgagtaattattattattattattataagtttcatagaaaagaaggagggtccac |
398438 |
T |
|
| Q |
198 |
tctcctcttgtcacataat-----gcatcttcatcaacat----gataaatataacaatcaaaataggccccagttattaatgatctgtggggtgggtcc |
288 |
Q |
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| T |
398439 |
tctcctcttgtcacataatataatgcatcttcatcaacatacatgataaatataacaatcaaaacaggccccagttattaatgatctgtgg-----gtcc |
398533 |
T |
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| Q |
289 |
caccgagttggggatttgggagctgaaagaggtattgcactgctccaacgaaacaatgagagagaattctttataata------ttcttcttcttctaga |
382 |
Q |
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| T |
398534 |
caccgagttggggatttgggagctgaaagaggtattgcactgctccaacgaaacaatgagagagaatcctttataatattcttcttcttcttcttctaga |
398633 |
T |
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| Q |
383 |
taagatattttcttgcatttgtggaatgtaaaa |
415 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
398634 |
taagatatttgcttgcatttgtggaatgtaaaa |
398666 |
T |
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