View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15144_high_2 (Length: 415)
Name: NF15144_high_2
Description: NF15144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15144_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 50407190 - 50406791
Alignment:
| Q |
1 |
ttgtaaaaaacaccaagttcgttgttctgtttgaccggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407190 |
ttgtaaaaaacaccaagttcgttgttctgtttaaccggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataa |
50407091 |
T |
|
| Q |
101 |
gcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407090 |
gcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacac |
50406991 |
T |
|
| Q |
201 |
aacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatt |
300 |
Q |
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| T |
50406990 |
aacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatt |
50406891 |
T |
|
| Q |
301 |
tgccaaactttcggttttggtannnnnnnagtcactgctaaccatatcataaagtaaccaaagaagttaagaagggaaccaattgcaagaacaacataag |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50406890 |
tgccaaactttcggttttggtatttttttagtcactgctaaccatatcataaagtaaccaaagaagttaagaagggaaccaattgcaagaacaacataag |
50406791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 37 - 368
Target Start/End: Complemental strand, 50393541 - 50393210
Alignment:
| Q |
37 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
136 |
Q |
| |
|
|||||||| || ||||| |||||||||||| ||| ||||| ||||| ||||||||| | |||| |||||||||||| |||| ||||||| | ||||||| |
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| T |
50393541 |
ggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatag |
50393442 |
T |
|
| Q |
137 |
cagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagt |
236 |
Q |
| |
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|||| ||||| |||||||| || |||||||||||||||||||||||||| | ||| ||||| || | || |||| ||| |||||||||||||||||||| |
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| T |
50393441 |
cagagtaaagctgtgtgattattgcaccactaagaccaacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaacacaagt |
50393342 |
T |
|
| Q |
237 |
aacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnnnnnagtcact |
336 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || || ||| |
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| T |
50393341 |
cacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaacttttggtcttgctatttttttggtgact |
50393242 |
T |
|
| Q |
337 |
gctaaccatatcataaagtaaccaaagaagtt |
368 |
Q |
| |
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| |||||| ||||||||||||||||| ||||| |
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| T |
50393241 |
gataaccaaatcataaagtaaccaaaaaagtt |
50393210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 50385122 - 50384849
Alignment:
| Q |
37 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
136 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||| |||||| |||||||||||| |||| ||||||| ||||||||| |
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| T |
50385122 |
ggtttcatatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatag |
50385023 |
T |
|
| Q |
137 |
cagaataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagt |
236 |
Q |
| |
|
|||| ||||| |||||||| || |||||||| ||||||||||| ||||| | ||| ||||| || | || |||| ||| |||||||||||||||||||| |
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| T |
50385022 |
cagagtaaagctgtgtgatgattgcaccactgagaccaacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagt |
50384923 |
T |
|
| Q |
237 |
aacaagtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactt |
310 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384922 |
cacaagtgaaccagtgtttgcaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactt |
50384849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 85 - 308
Target Start/End: Complemental strand, 50390219 - 50389996
Alignment:
| Q |
85 |
ggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataacctt |
184 |
Q |
| |
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||||||||| | ||||||||||||||||| |||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
50390219 |
ggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatcctt |
50390120 |
T |
|
| Q |
185 |
ttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctataca |
284 |
Q |
| |
|
||| ||| ||||| ||| | || |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |
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|
| T |
50390119 |
ttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgagaattagcacctatgca |
50390020 |
T |
|
| Q |
285 |
aatgtaaagacacatttgccaaac |
308 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
50390019 |
aatgtaaagacacatttgccaaac |
50389996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 141 - 311
Target Start/End: Complemental strand, 41334118 - 41333948
Alignment:
| Q |
141 |
ataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaaca |
240 |
Q |
| |
|
||||| |||||| |||||||||||||| | |||||||||||||||||||| || || ||| ||||||| | | ||||||||||||||||||||||| |
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| T |
41334118 |
ataaatttgtgtaataatagcaccacttaaaccaacataaccttttaaaagacctaaaacactaccacgactattagggaaattcttaacacaagtaact |
41334019 |
T |
|
| Q |
241 |
agtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaacttt |
311 |
Q |
| |
|
| | ||| ||||| | ||||| |||||||| ||||| || ||||| ||||||||||||||||||||||| |
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|
| T |
41334018 |
aaagcacctgtgttagtaaaagtttgagaatttgcaccaatgcaaatataaagacacatttgccaaacttt |
41333948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 41334209 - 41334161
Alignment:
| Q |
59 |
gaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaat |
107 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||||||||||| ||||| |
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|
| T |
41334209 |
gaagaaaaagaaaagaaacagcagcaggaagccaagcaataagtaaaat |
41334161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 24223995 - 24223916
Alignment:
| Q |
102 |
caaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataac |
181 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||||||||| |||||||||||||| || |||||||||||||||||||||| |
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|
| T |
24223995 |
caaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgatgattgcaccactaagaccaacataac |
24223916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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