View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15144_low_1 (Length: 619)
Name: NF15144_low_1
Description: NF15144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15144_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 20 - 602
Target Start/End: Complemental strand, 39300197 - 39299623
Alignment:
| Q |
20 |
cgtggcacaatccttgatattatagagaatcactgtcaaatctagccgatgaaaccttgattgagtttgtgttgcaaattcaacaatttaacaaactgtt |
119 |
Q |
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| T |
39300197 |
cgtggcacaatccttgatattatagagaatcaccgtcaaatctagccgatgaaaccttgattgagttcgtgttgcaaattcaacaatttaacaaactgtt |
39300098 |
T |
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| Q |
120 |
atgtcctaaaaccctagcaacttcaattaagttttcgttgaccaagatttgacaaggattatataaaaataattaatacaatatatgatacagaaaagaa |
219 |
Q |
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| T |
39300097 |
atgtcctgaaaccctagcaacttcaattaagttttcgttgacca-gatttgacaaggattatataaaaaaaattaatacaatat--gatacagtaaaaaa |
39300001 |
T |
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| Q |
220 |
aagaaaaatcattttatgttgttctagtctaatatactctcatgaaatgtgatgaaaaagagaatataaataatttatgagcatttacctaaaagcttat |
319 |
Q |
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| T |
39300000 |
aa-----atcattttatgttgttctagtctaatatactctcatgaaatgtgatgaaaaagagaatataaataatttatgagcatttacctaaaagcttat |
39299906 |
T |
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| Q |
320 |
atttttatgttaattaatttattgatatttgacaataatgtaaattgttatgtatcatgcaaaacctcgtaatcgaacgtgaaaagcatcaaacctacnn |
419 |
Q |
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| T |
39299905 |
atttttatgttaattaatttattgatatttgacaataatgtaaattgttatgtatcatgcaaaacctcataatcgaacgtgaaaagcatcaaacctacaa |
39299806 |
T |
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| Q |
420 |
nnnnngatgttattgagttctaaaaaataaataaactacacctgaaggttgttgtaacgattgaaagttttgaggcagactgggcatgagaagtgactga |
519 |
Q |
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| T |
39299805 |
aaaaagatgttattgagttctaaaaaataaataaactacacctgaaggttgttgtaacgattgaaagttttgaggcagactgggcatgagaaatgactga |
39299706 |
T |
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| Q |
520 |
atccaatgagaatctgttcttgagttggtatccagtaattgttaggaacatgatttgggacattcagaaatccattttcattt |
602 |
Q |
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| T |
39299705 |
atccaatgagaatctgttcttgagttggtatccagtaattgttaggaacatgatttgggacattcagaaatccattttcattt |
39299623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 430 - 608
Target Start/End: Complemental strand, 26879758 - 26879577
Alignment:
| Q |
430 |
tattgagttctaaaaaataaataaactac---acctgaaggttgttgtaacgattgaaagttttgaggcagactgggcatgagaagtgactgaatccaat |
526 |
Q |
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| T |
26879758 |
tattgagttgtaaaaaataagaaaactactacacctgaaggttgttgtaacgattgaaagttttgaggcaaactgggcaagagaaatgactgaatccaat |
26879659 |
T |
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| Q |
527 |
gagaatctgttcttgagttggtatccagtaattgttaggaacatgatttgggacattcagaaatccattttcatttgatgat |
608 |
Q |
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| T |
26879658 |
gagaatctgttcttgagttggtatccagtaattgttaggaacttgatttggtacactcacaaacccattttcatttggtgat |
26879577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 26880125 - 26879953
Alignment:
| Q |
29 |
atccttgatattatagagaatcactgtcaaatctagccgatgaaaccttgattgagtttgtgttgcaaattcaacaatttaacaaactgttatgtcctaa |
128 |
Q |
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| T |
26880125 |
atccttgatattatagagaatcactgtcaaatctgaccgatgaaacctcgattgcgttcgtgttgcaaattcaacaatttcacaaactgttatgtcctaa |
26880026 |
T |
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| Q |
129 |
aaccctagcaacttcaattaagttttcgttgaccaagatttgacaaggattatataaaaataattaatacaatat |
203 |
Q |
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| T |
26880025 |
aaccctaggaacttcaattaaagtttcattgacc-agatttgacaaggattgtatgaaaa-atttaatacaatat |
26879953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 26879880 - 26879814
Alignment:
| Q |
294 |
ttatgagcatttacctaaaagcttat---atttttatgttaattaatttattgatatttgacaataa |
357 |
Q |
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| T |
26879880 |
ttatgagcatttaactaaaagcttattatatttttatgttgattaatttgttgatatgtgacaataa |
26879814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 26879947 - 26879911
Alignment:
| Q |
257 |
tctcatgaaatgtgatgaaaaagagaatataaataat |
293 |
Q |
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| T |
26879947 |
tctcatgagatgtgatgaaaaagagaatataaataat |
26879911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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