View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15144_low_5 (Length: 387)
Name: NF15144_low_5
Description: NF15144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15144_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 42129845 - 42129519
Alignment:
| Q |
19 |
actaagttgtataaaagatataaagaatgtaacctcgataacacttgaaatnnnnnnngacccgataacacttgaataagatgataaataatctttttaa |
118 |
Q |
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| T |
42129845 |
actaaattgcataaaagatctaaagaatgtagccttgataacacttcaaataaaaaaagacccgataacacttgaataagatgataaataatttttttaa |
42129746 |
T |
|
| Q |
119 |
agaannnnnnnatcaacattttaactagataaattagtatatacagttttgcaagtagacaaaaagagccaaccaactaacgtaggaagcaatttagttt |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42129745 |
agaatttttttatcaacattttaactagataaattagtatatacagttttgcaagtagacaaaaagagccaaccaactaacgtaggaagcaatttagttt |
42129646 |
T |
|
| Q |
219 |
cacacataaatgaatacagttggactgtgtcaaaaaaacaagnnnnnnnnnnnnnnnnnnntacaacttcataaaaatttaactcatttatttgcgttct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42129645 |
cacacataaatgaatacagttggactgtgtcaaaaaaacaag--tctctctctctctctcttacaacttcataaaaatttaactcatttatttgcgttct |
42129548 |
T |
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| Q |
319 |
gtcttaataatttttttcttctgctacta |
347 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42129547 |
gtcttaataatttttttcttctgctacta |
42129519 |
T |
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