View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15145_high_4 (Length: 441)
Name: NF15145_high_4
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15145_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 56 - 423
Target Start/End: Original strand, 37471665 - 37472032
Alignment:
| Q |
56 |
gtaaagagcatgctgattagactatgtatactaatgactctatagaacccacctaatttgaaaaccatgtttaatgtgagagttacattgttactgttct |
155 |
Q |
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| T |
37471665 |
gtaaagagcatgctgattagactatgtatactaatgactctatagaacccacctaatttgaaaaccatgtttaatgtgagagttacattgttactgttct |
37471764 |
T |
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| Q |
156 |
cttgataagatctggaacataactgggtgaaggggaactatctgtcggacagttcattagttttgaaaagggtaaagatacaccgaggaaaagtagtccc |
255 |
Q |
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| T |
37471765 |
cttgataagatctggaacataactgggtgaaggggaactattcgtcggtcagttcattagttttgaaaagggtaaagatacaccgaggaaaagtagtccc |
37471864 |
T |
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| Q |
256 |
cacggtttgtaattcccagcaactgaacaaaagccaaatatcccactaacagggggatgatgggaatattcagagctcttagaggttgagttattcctat |
355 |
Q |
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| T |
37471865 |
cacggtttgtaattcccagcaactgaacaaaagccaaatatccctctaacagggggatgatgggaatattcagagttcttagaggttgagttattcctat |
37471964 |
T |
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| Q |
356 |
catacaattagtttaggacttcttccactgccagaacggcagactacttcgacacagaacgatggata |
423 |
Q |
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| T |
37471965 |
catacaattagtttaggacttcttccactgccagaacggcagactacttcgacacagaacgatggata |
37472032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 22342792 - 22342835
Alignment:
| Q |
303 |
aacagggggatgatgggaata-ttcagagctcttagaggttgag |
345 |
Q |
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| T |
22342792 |
aacagggggatgatgggaataattcagagctcttagaggttgag |
22342835 |
T |
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