View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15145_high_8 (Length: 382)

Name: NF15145_high_8
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15145_high_8
NF15145_high_8
[»] chr3 (31 HSPs)
chr3 (2-376)||(10034933-10035302)
chr3 (25-376)||(9980419-9980765)
chr3 (17-376)||(10263646-10264000)
chr3 (13-376)||(10129863-10130214)
chr3 (27-328)||(9841813-9842109)
chr3 (25-328)||(10520438-10520736)
chr3 (27-328)||(9852832-9853128)
chr3 (2-285)||(10430898-10431180)
chr3 (34-281)||(10666497-10666742)
chr3 (34-320)||(10583544-10583829)
chr3 (27-285)||(10360658-10360915)
chr3 (1-270)||(11772163-11772429)
chr3 (1-270)||(11778856-11779122)
chr3 (91-285)||(10372768-10372961)
chr3 (14-223)||(10091937-10092146)
chr3 (14-223)||(10198819-10199028)
chr3 (102-281)||(10503681-10503857)
chr3 (308-376)||(10430718-10430786)
chr3 (27-283)||(10531736-10531989)
chr3 (27-224)||(10680534-10680731)
chr3 (1-125)||(10583442-10583566)
chr3 (170-249)||(10086273-10086352)
chr3 (170-249)||(10193193-10193272)
chr3 (27-74)||(10503537-10503584)
chr3 (34-68)||(10091750-10091784)
chr3 (34-68)||(10198632-10198666)
chr3 (187-234)||(8585531-8585578)
chr3 (27-65)||(10091812-10091850)
chr3 (27-65)||(10198694-10198732)
chr3 (34-79)||(9852701-9852746)
chr3 (39-124)||(9852775-9852860)
[»] scaffold0083 (1 HSPs)
scaffold0083 (25-376)||(54372-54718)
[»] chr4 (1 HSPs)
chr4 (25-249)||(17849815-17850039)
[»] chr2 (1 HSPs)
chr2 (34-233)||(26909850-26910049)
[»] chr8 (1 HSPs)
chr8 (27-249)||(44954552-44954773)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 10034933 - 10035302
Alignment:
Q  2 tctctgttttaggaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagag 101  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||     ||||||||||| |||    
T  10034933 tctctgtttttggaattgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttagattgtgggattgtaaaaagcttgag 10035032  T
Q  102 tcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtcca 201  Q
    ||||||||||||||||||||| |||||||||||| | ||||   |||||  |  || |||||||||| |||||||||||||||||||||||| |||||||    
T  10035033 tcattaccagaagacagcctcactgactctcttagggaactctgcatttggaattgcccattgttagaagaaaggtataaaaggaaggaacattggtcca 10035132  T
Q  202 aaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccag 301  Q
    ||||||||||||||||| ||||| |||||||| | ||||||||||||| || || ||||||||||||||  |||||||||||||||||||||||||||||    
T  10035133 aaattgctcacatccctttcatagatataaatcatgaagtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccag 10035230  T
Q  302 aaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 376  Q
    |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10035231 aaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 376
Target Start/End: Original strand, 9980419 - 9980765
Alignment:
Q  25 aacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |   ||||||||||||||||||||||||||||||||||||||    
T  9980419 aacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccc 9980518  T
Q  125 tgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata 224  Q
    ||| ||||||||| ||||   |||   | | || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9980519 tgaatctcttaaggaactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcata 9980618  T
Q  225 tatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatc 324  Q
    |  |||||| || |||||||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  9980619 tcaataaattacaaagtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatc 9980713  T
Q  325 tgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9980714 tgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 9980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 10263646 - 10264000
Alignment:
Q  17 ttgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagac 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||| ||||||||||||||||||||||||||    
T  10263646 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttctattgcttggatgtgaaaagctagagtcattaccagaagac 10263745  T
Q  117 agcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatcc 216  Q
    |||||||||  ||||||||| | ||| |  ||       || |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||    
T  10263746 agcctcccttcctctcttaaactactcgctatcgagttttgcccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatcc 10263845  T
Q  217 ctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataat 316  Q
    || |||||   |||||||| ||||||||||||| || ||| |||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||    
T  10263846 ctttcataagaataaatgatgaagtcacaatatgat-aga-caagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataat 10263940  T
Q  317 caatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10263941 caatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10264000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 10129863 - 10130214
Alignment:
Q  13 ggaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgat-gtaaaaagctagagtcattaccag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | || ||  ||| || |||||||||||||||||||||    
T  10129863 ggaattgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttgactt-ttgggattgtgaaaagctagagtcattaccag 10129961  T
Q  112 aagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctca 211  Q
    |||||||||||||||| ||||||| ||||||   ||||    ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  10129962 aagacagcctccctgattctcttatgcaactgtgcattcaaggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctca 10130061  T
Q  212 catccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgcca 311  Q
    ||||||| ||| | |||| ||      || |||||||| || ||| |||||||||||||  ||||||||||| |||  |||||||||||||||   ||||    
T  10130062 catccctttcaaaaatatcaa------aggcacaatatgat-aga-caagttgtgttcccatttcaggtatgctcct-agttcctaccagaaa---gcca 10130149  T
Q  312 ataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 376  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10130150 ataatcaatcctctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 27 - 328
Target Start/End: Original strand, 9841813 - 9842109
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctg 126  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||  |||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  9841813 cttgagtcattgccagaaaactgcctcccttcctcgctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctg 9841912  T
Q  127 actctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatata 226  Q
    |||||||| |||  ||   |||||   ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||     
T  9841913 actctcttgagcgtctgaacatttggggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatg 9842012  T
Q  227 tataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctg 326  Q
     |||||  || |||||| ||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||| ||||    
T  9842013 gataaaccaccaagtcagaatatgat-ag-acaagttgtgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctg 9842107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 25 - 328
Target Start/End: Original strand, 10520438 - 10520736
Alignment:
Q  25 aacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    |||| |||||||  | |||||||||||||||||||||||    
T  10520438 aacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccc 10520537  T
Q  125 tgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata 224  Q
    ||||||||| |||  |||  ||||||    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  10520538 tgactctctgaagagactgctcatttgggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagtcata 10520637  T
Q  225 tatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatc 324  Q
    |  |||||| || |||||||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||    
T  10520638 tcaataaattaccaagtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctc 10520732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 27 - 328
Target Start/End: Original strand, 9852832 - 9853128
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctg 126  Q
    |||||| |||| ||||||||||||||||| || |||||||||| |||| ||||||    |||| ||||||||||||||||||||||||||||||||||||    
T  9852832 cttgagtcattaccagaaaactgcctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctg 9852931  T
Q  127 actctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatata 226  Q
    |||| || |||  ||| | ||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  9852932 actcactgaagagactggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcataga 9853031  T
Q  227 tataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctg 326  Q
     ||||||||| | || ||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||    
T  9853032 aataaatgaccaggttacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctg 9853126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 10431180 - 10430898
Alignment:
Q  2 tctctgttttaggaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagag 101  Q
    |||||||||| ||  |||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||    |||| ||||||| |||    
T  10431180 tctctgtttttggttttgtgatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttgatttgtggaaatgtgaaaagcttgag 10431081  T
Q  102 tcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtcca 201  Q
    |||||||||||||||||||||||||||||||||||||||||    |||     |||||||||||||| |||||||||||||||||||||||| |||||||    
T  10431080 tcattaccagaagacagcctccctgactctcttaagcaactgagaattagggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtcca 10430981  T
Q  202 aaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt 285  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| || || |||||||||||||||| |||||||||||||    
T  10430980 aaattgctcacatccctgtcatagatataaatgatgaagtcacaatatgat-ag-acaagttgtgttccagttttcaggtatgtt 10430898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 34 - 281
Target Start/End: Original strand, 10666497 - 10666742
Alignment:
Q  34 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctct 133  Q
    |||| |||||| || ||||||||||||||||||||| |||| ||||||||  |||| ||||||| |||||||||||||||||||||||||||||||||||    
T  10666497 cattaccagaagacagcctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 10666596  T
Q  134 taagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat 233  Q
    |||| ||||   ||||     |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||    
T  10666597 taaggaactgcacattgaggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaat 10666696  T
Q  234 gacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta 281  Q
     || |||||||||||| || || || ||||||||||| ||||||||||    
T  10666697 tacaaagtcacaatatgat-ag-acgagttgtgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 34 - 320
Target Start/End: Original strand, 10583544 - 10583829
Alignment:
Q  34 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctct 133  Q
    |||| |||||| || ||||||||||||||||||||| |||||||||  |  | |||  ||  || |||||||||||||||||||||||||||||||||||    
T  10583544 cattaccagaagacagcctcccttcctcgctgaaatcacttcaatttgtgggttgtgtaagactcgagtcattaccagaagacagcctccctgactctct 10583643  T
Q  134 taagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat 233  Q
    | ||| |||   |||       || |||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| | ||||||    
T  10583644 tgagcgactgaccatccaattttgcccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaat 10583743  T
Q  234 gacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgttccacagttcctaccagaaaactgccaataatcaat 320  Q
     || |||||||||||| || || |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10583744 cacaaagtcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgttccacatttcctaccagaaaactgccaataatcaat 10583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 10360915 - 10360658
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctg 126  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||||  ||| | | | ||| |||||||  | |||||||||||||||||||||||||    
T  10360915 cttgagtcattaccagaaaactgcctcccttcctcgctgaaatcacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccctg 10360816  T
Q  127 actctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatata 226  Q
    ||||||||||| |||| | ||| | |   || |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||| |    
T  10360815 actctcttaaggaactggacatctatgattgcccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataaa 10360716  T
Q  227 tataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt 285  Q
     ||||| ||| |||||||||||| || || |||||||||||||| | |||||||||||||    
T  10360715 aataaacgaccaagtcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 11772163 - 11772429
Alignment:
Q  1 atctctgttttaggaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctaga 100  Q
    |||||| |||| ||||||||||  | || ||| ||||||||||||||||||||||||||||| |||||| ||||  |||       ||| |  |||| ||    
T  11772163 atctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcctcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttga 11772262  T
Q  101 gtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtcc 200  Q
    ||||||||| |||||||||||||| |||||||||||||||||   |||||   |||| |||||||||| |||||||||||||||||| ||||| ||||||    
T  11772263 gtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtcc 11772362  T
Q  201 aaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttcc 270  Q
    ||||| |||||||||||||||||| ||||||||||  ||||||||||   ||||||||||| ||||||||    
T  11772363 aaaatcgctcacatccctgtcatagatataaatgaaaaagtcacaat---atgagaacaagctgtgttcc 11772429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 11779122 - 11778856
Alignment:
Q  1 atctctgttttaggaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctaga 100  Q
    |||||| |||| ||||||||||  | || ||| ||||||||||||||||||||||||||||| |||||| ||||  |||       ||| |  |||| ||    
T  11779122 atctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcctcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttga 11779023  T
Q  101 gtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtcc 200  Q
    ||||||||| |||||||||||||| |||||||||||||||||   |||||   |||| |||||||||| |||||||||||||||||| ||||| ||||||    
T  11779022 gtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtcc 11778923  T
Q  201 aaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttcc 270  Q
    ||||| |||||||||||||||||| | ||||||||  ||||||||||   ||||||||||| ||||||||    
T  11778922 aaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaat---atgagaacaagctgtgttcc 11778856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 91 - 285
Target Start/End: Complemental strand, 10372961 - 10372768
Alignment:
Q  91 aaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaagga 190  Q
    ||||||| |||||||||||||||||||||||||||  |||||| |||  ||| |||||| |  |||| |||||||||| |||||||||||||||||||||    
T  10372961 aaaagcttgagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaagga 10372862  T
Q  191 acagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt 285  Q
    ||| ||||||||||||||||||||||| |||||| | ||||| ||| || ||||||||| || || |||||||||||||| | |||||||||||||    
T  10372861 acattggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 10091937 - 10092146
Alignment:
Q  14 gaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaa 113  Q
    ||||||| | || |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  ||||  |   ||||||| ||| || ||||||||||||    
T  10091937 gaattgtgaaaagcttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaa 10092036  T
Q  114 gacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcaca 213  Q
    ||||||||||||   |||||||     ||   |||| |  |||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  10092037 gacagcctcccttcatctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcaca 10092136  T
Q  214 tccctgtcat 223  Q
    ||||||||||    
T  10092137 tccctgtcat 10092146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 10198819 - 10199028
Alignment:
Q  14 gaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaa 113  Q
    ||||||| | || |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  ||||  |   ||||||| ||| || ||||||||||||    
T  10198819 gaattgtgaaaagcttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaa 10198918  T
Q  114 gacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcaca 213  Q
    ||||||||||||   |||||||     ||   |||| |  |||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  10198919 gacagcctcccttcatctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcaca 10199018  T
Q  214 tccctgtcat 223  Q
    ||||||||||    
T  10199019 tccctgtcat 10199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 281
Target Start/End: Original strand, 10503681 - 10503857
Alignment:
Q  102 tcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtcca 201  Q
    |||||||||||||||||||| ||||| |||||||||| |||  |||||   ||||| |||   |||| |||||||||||||||||||||||| |||||||    
T  10503681 tcattaccagaagacagccttcctgattctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaaggaaggaacattggtcca 10503780  T
Q  202 aaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta 281  Q
    ||||| ||||||||||||||||| | ||| |||   ||||||||||   ||||| ||| | |||||||| ||||||||||    
T  10503781 aaatttctcacatccctgtcatagaaatagatggacaagtcacaat---atgaggacaggctgtgttcccgtttcaggta 10503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 10430786 - 10430718
Alignment:
Q  308 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10430786 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 283
Target Start/End: Original strand, 10531736 - 10531989
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctg 126  Q
    |||||| ||||||||||||| |||||||||||||||||||| | ||||||||| |   | |||  ||  || |||||||||||||||||||||||||||     
T  10531736 cttgagtcattgccagaaaattgcctcccttcctcgctgaagtcacttcaattttcgagttgtgtaagacttgagtcattaccagaagacagcctccctt 10531835  T
Q  127 actctcttaagcaactagtcattttt-agatgt--ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 223  Q
     |||||||||   |||| ||| | |  || | |  |||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  10531836 cctctcttaa---actactcactatcgagttttgcccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcat 10531932  T
Q  224 atatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatg 283  Q
    |   |||||  |  |||| |||||   ||||  |||||||||||||| ||||||||||||    
T  10531933 aataataaacaagcaagttacaat---atgaagacaagttgtgttcccgtttcaggtatg 10531989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 10680534 - 10680731
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctg 126  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||||| ||  | |||  ||  || ||||  |||||||||||||||||||||     
T  10680534 cttgagtcatttccagaaaattgcctcccttcctcgctgaaatcacttcaatttttgagttgtgtaagacttgagttgttaccagaagacagcctccctt 10680633  T
Q  127 actctcttaagcaactag---tcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 223  Q
     ||||||||| | |||     |||  |||   || |||||||||| |||||||||||||||||| |||||  ||||||||||| ||||||||||||||||    
T  10680634 cctctcttaaactactcactatcaagttt---tgcccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcat 10680730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10583442 - 10583566
Alignment:
Q  1 atctctgttttaggaattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcga-tgtaaaaagctag 99  Q
    |||||||||||   | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||  ||| | | || ||| ||||||| |    
T  10583442 atctctgttttttcatttgtcatcaacttgagacattgccagaaaactgcctcccttcctcactgaaatcactttcatt-tatggattgtgaaaagcttg 10583540  T
Q  100 agtcattaccagaagacagcctccct 125  Q
     |||||||||||||||||||||||||    
T  10583541 ggtcattaccagaagacagcctccct 10583566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 10086273 - 10086352
Alignment:
Q  170 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 249  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10086273 agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10086352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 10193193 - 10193272
Alignment:
Q  170 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 249  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10193193 agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10193272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 10503537 - 10503584
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctgaaattactt 74  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10503537 cttgagtcattgccagaaaactgcctcccttcctcgctgaaattactt 10503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 10091750 - 10091784
Alignment:
Q  34 cattgccagaaaactgcctcccttcctcgctgaaa 68  Q
    |||||||||||||||||||||||||||||||||||    
T  10091750 cattgccagaaaactgcctcccttcctcgctgaaa 10091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 10198632 - 10198666
Alignment:
Q  34 cattgccagaaaactgcctcccttcctcgctgaaa 68  Q
    |||||||||||||||||||||||||||||||||||    
T  10198632 cattgccagaaaactgcctcccttcctcgctgaaa 10198666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 8585578 - 8585531
Alignment:
Q  187 aggaacagtggtccaaaattgctcacatccctgtcatatatataaatg 234  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcataaatataaatg 8585531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 10091812 - 10091850
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctg 65  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10091812 cttgagtcattgccagaaaactgtctcccttcctcgctg 10091850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 10198694 - 10198732
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctg 65  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10198694 cttgagtcattgccagaaaactgtctcccttcctcgctg 10198732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 9852701 - 9852746
Alignment:
Q  34 cattgccagaaaactgcctcccttcctcgctgaaattacttcaatt 79  Q
    ||||||||||||||||| |||||||||| ||||||| |||| ||||    
T  9852701 cattgccagaaaactgcttcccttcctcactgaaatcacttaaatt 9852746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 9852775 - 9852860
Alignment:
Q  39 ccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc 124  Q
    |||| |||||||||||| || |||||||||| |||| ||||  ||   ||||| ||||| ||||||||||||||| || |||||||    
T  9852775 ccagtaaactgcctcccatcatcgctgaaatcacttaaatttgttgattgtaagaagcttgagtcattaccagaaaactgcctccc 9852860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 376
Target Start/End: Complemental strand, 54718 - 54372
Alignment:
Q  25 aacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |   ||||||||||||||||||||||||||||||||||||||    
T  54718 aacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccc 54619  T
Q  125 tgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata 224  Q
    ||| ||||||||| ||||   |||   | | || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54618 tgaatctcttaaggaactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcata 54519  T
Q  225 tatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatc 324  Q
    |  |||||| || |||||||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  54518 tcaataaattacaaagtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatc 54424  T
Q  325 tgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54423 tgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 54372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 17850039 - 17849815
Alignment:
Q  25 aacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccc 124  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||  ||| |||| | |   |||||||  || ||||| ||||||||||||||||||||    
T  17850039 aacttgagtcattgccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctccc 17849940  T
Q  125 tgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata 224  Q
    |  ||||||||||| ||| |||||||   |||| ||  | |||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  17849939 ttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata 17849840  T
Q  225 tatataaatgacgaagtcacaatat 249  Q
     | ||  | ||| ||||||||||||    
T  17849839 gaaattgaggaccaagtcacaatat 17849815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 26909850 - 26910049
Alignment:
Q  34 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctct 133  Q
    |||| |||||||||||||||||||||||||||||||  |||||||| | | | ||| | || || |||||||||||||||||||||||||| ||||||||    
T  26909850 catttccagaaaactgcctcccttcctcgctgaaatatcttcaattttatggctgtgagaaacttgagtcattaccagaagacagcctccccgactctct 26909949  T
Q  134 taagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat 233  Q
    | ||   || |  || |     || |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  26909950 tgagatgctggaaatgtcatcttgcccattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat 26910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 44954773 - 44954552
Alignment:
Q  27 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctg 126  Q
    |||||| |||| ||||||||||| || |||||||||||||||| ||||||||| ||    ||| || | || ||||| ||||||||||| ||||||||      
T  44954773 cttgagtcatttccagaaaactgtcttccttcctcgctgaaatcacttcaatttttgttttgtgaaga-cttgagtcgttaccagaagaaagcctcccca 44954675  T
Q  127 actctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatata 226  Q
    |||||||||| | ||| |||||||   |||| ||  | | || ||||||||||| |||||||||||| ||||||||||||||| | || | ||||||| |    
T  44954674 actctcttaatcgactggtcatttggcgatgccctgtatcagaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcataga 44954575  T
Q  227 tataaatgacgaagtcacaatat 249  Q
     ||| ||| | ||||||||||||    
T  44954574 aatagatggccaagtcacaatat 44954552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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